Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00345 ATGGCTGGAATGTCAAAGGAGGAAGTGACTGGTAGTCCTAAATGGGGTGCTTCAATTATTATGCAGACAACAGAGGATGTGGCTAGAGCTGTTGCTTCTGCTGTGAATTCCCCAAGGCCATCTGTTATATATTCATCAAAAAATGATCAAGGTGGAAATCAACTACAAAAGCTGCAGTATCAAGTTACAAAAATGATAAAAGGATTTTCTCGCCCTTCTGAAGTTAAATATAATAATTACAATCCCGAAATACTGACAACTCAGAAGCGTCAATGGGCTGCAAACTTTCAGTTACAGTACATGGACCATAGGTCATGGAAGGAGCCAACAAAGCTGTTTGAAAGCATGGTGGTTGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAGCGCAATATTTCTTAAGAAAGTCTGAAGGCCCTGGTAAATTAAGAAGTGCTCTTGGTTATCAGAATCAATCCCGTGTGGGGCCTATTCTTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAATGACAAGGATCTTCTCTCTTTCTGCTTCCCTGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACACCTTCCATGAGTGAATTGAATGAAATTCTTTTTGGGCAGGAACACCTTAAACAAAGGGATCTGTCTTTTGTATTTAGACTACAGGGTGCTGATAATTCAACTCTTTATGGATGCTGTGTCTTGGTTGAAGAGTTAGTGCAAAAACCCTCTGGATTGCTCTCCCTGATTTCTGATAAAAGGTCAAGCTATTCTCCTTTGAAACGTGAACGGCATATATTAACTACACAAAGATGTTACTGCATTCTCTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTTTTGAACAGCATCTTCATGCAAGAACGACTAGATCGCTTGACGAAAAACTTTGGAGATTTAGATTTAGAATATGTTGAAGATAGCTGTGGGCAAGACAATTTTGGGGAAGATTCAGAATTCATGTTGGTGAATGATAGATTAGAAGATAGACATGATGACAGTCCAATGATTTCTCAATCAAGCCTAAGAAATTCCTCACCGGAAATAATTGAGGATGATAGTAATTATCCCAAGAAAGAAATAGTTAATGCGGAGCTGCATATATTTAATGATAGAGTCAATGATGGCAATGACGTGCCTTGTGATCTTGAGAAGGATAAAAAAACTGTTAATGAGGAATCTGCCCCTACGAATGCTGAGGATTGTGCTTTGTACGGAGATTCTTTTGTAACAAATAAACAGTCAGAAGATAGGCGTTTACCCAATGCTATTCTACCACTCTTGCGGTATTGCCAGTATGAAAGCTCTGAATCTTCCTGCAGTTTTCAGGGTTCTCCTTGTGATGACAGGAATTTCAGGAGTGATGCCGATGATACTGAGACAGAAGATGCTTCATTCTCTGGTCAAGAGGATTTAAATGACCTAAATGGTATTCTTGAGTGGGCTAAGGCAAATAACTGTGGATTATTACAGATTATAAGTGAGTATTATTGCTTGAGTTGCCCTGCAAGGGGCACATCAATTAGATTTCATCCTTTGGATCACCTGCATCCCTTAGAATATCACAGACCAGATGAGGCAATTCTTAATCTTGCTGGTTCAATTGTTGATTTGAAATCTTTCAGTGCAGGTCTGGAATTTGCAGAGGCTCATAATTCTCTTCTGGCTGAGGAGGAGGCAACTGCATTATCTACATGGGCTGTTGGGTGCATGTGCGGTACCTTGAGACTTGAAAATGTGTTAGCATTCTTTGCAGGAGCTCTACTAGAGAAGCAGATAGTCTTTGTCTGTTCTAATTTGGGAATCCTATCTGCGTCAGTTTTATCAGTTATTTCGCTAATCCGGCCCTACCAATGGCAAAGCTTGCTAATGCCGGTTCTACCAAATGACATGCTTGAGTTTCTGGATGCACCTGTGCCTTACATAGTTGGTATCAAAAACAAGACCAGTGAAGTTCAGTCAAAGTTAACTAATAATGTTATCCTGGTTGACGTCAACAGGAATCAGGTGAGGTCATCAACAATACCTCAACTGCCAAGGCAGAAAGAGTTGATCGCTTCTTTACGCCCTTATCATGCAACTCTAGTGGGAGAAAGTTACTTAGGTAGGAGAAGGCCAGTATATGAATGCACAGAAGTGCAGGTAGAAGCTGCCAAGGGGTTCTTATCGGTGTTAAGGACTTATTTGGATTCCCTTTGCCATAACATTCGTTCTCATACAATAACCAATGTACAATCCAATGATGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATTGACTCATTTCCTTATCGTGATAGGCCTTTCATGAAGCTTTTCGTGGATACACAGCTCTTCTCTGTGCATACAGATCTTGTTCTCTCTTTCTTCCAAAAGGAATAG 2424 0.4047 MAGMSKEEVTGSPKWGASIIMQTTEDVARAVASAVNSPRPSVIYSSKNDQGGNQLQKLQYQVTKMIKGFSRPSEVKYNNYNPEILTTQKRQWAANFQLQYMDHRSWKEPTKLFESMVVVGLHPNCDIQALQAQYFLRKSEGPGKLRSALGYQNQSRVGPILEPQVLFVYPPEKQLPLNDKDLLSFCFPGGLEVNAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLLSLISDKRSSYSPLKRERHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLDRLTKNFGDLDLEYVEDSCGQDNFGEDSEFMLVNDRLEDRHDDSPMISQSSLRNSSPEIIEDDSNYPKKEIVNAELHIFNDRVNDGNDVPCDLEKDKKTVNEESAPTNAEDCALYGDSFVTNKQSEDRRLPNAILPLLRYCQYESSESSCSFQGSPCDDRNFRSDADDTETEDASFSGQEDLNDLNGILEWAKANNCGLLQIISEYYCLSCPARGTSIRFHPLDHLHPLEYHRPDEAILNLAGSIVDLKSFSAGLEFAEAHNSLLAEEEATALSTWAVGCMCGTLRLENVLAFFAGALLEKQIVFVCSNLGILSASVLSVISLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIKNKTSEVQSKLTNNVILVDVNRNQVRSSTIPQLPRQKELIASLRPYHATLVGESYLGRRRPVYECTEVQVEAAKGFLSVLRTYLDSLCHNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00345 807 Gene3D - 576 743 IPR043153 -
Vian4g00345 807 MobiDBLite consensus disorder prediction 345 365 - -
Vian4g00345 807 ProSiteProfiles Tripartite DENN domain profile. 146 807 IPR037516 -
Vian4g00345 807 SMART DENN_cls 273 681 IPR001194 -
Vian4g00345 807 SMART uDENN_cls 109 242 IPR005113 -
Vian4g00345 807 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 45 803 - -
Vian4g00345 807 Pfam uDENN domain 163 240 IPR005113 -
Vian4g00345 807 MobiDBLite consensus disorder prediction 350 364 - -
Vian4g00345 807 Gene3D - 100 310 - -
Vian4g00345 807 Pfam DENN (AEX-3) domain 567 680 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00345 Vian-Chr4 3856652 3865757 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00345 - - var:108331642 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00345 4 3856652 3865757 Vian4g00345 4 3856652 3865757 ECH
Vian1g00508 1 4820267 4833574 Vian4g00345 4 3856652 3865757 PCT