Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00508 ATGACTGGAATGTCCAAGGAAGAAGGGTCAGCTAGTCCTAGTTGGGGCGCTTCATTTTTTATGCAGACAAAAGAGGATGTAGCTAGAGCTGTTGCCGCTGCTGTTAACTCTCCGATGTCATCAAAAGATGATAATAGTGGCAGTCAACTTCAAAGGCTTCAGTATCAAGTTGCTCGAATGTTAAAAGGCTTTTCACACACTCCTGATGTTGAAAACACAAATTACAATCCTGAAATCCTGACTAGTCTGAAGCGTCAGTGGGCTGCAAACTTTCAGTTGCAGTATATGGACCATAAGACTTGGAAGGAGCCCTCACGACTATTTGAGAGCATGGTGATTGTCGGACTTCATCCTAATTGTGATGTTCAAGCACTGCAAAGGCAATATCATGAAAGGAAGTTTGAAGGCTCTGCTAAATTAAGAAGTGCTCTTGGTTATCAGAGTCAATCTTGTGTAGAACCCAATATTGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACCGCTGCCTCTTAAATGCAAAAATCTTCTTTCTTTCTGCTTCCCGGGAGGCTTAGAGGTCCGTGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTTTTTGGGCAGGAACACGTTAAACAAAGGGATTTGTCATTTGTATTCAGGTTACAGGGTGCTGACAACTCAACACTTTATGGGTGTTGTGTCTTAGTTGAAGAACTAGTGGAAAAGCCTTCTGGATTGCTTTCTCTGATTTCTGATAAGCAGCCTTCTTCCTCTTCTTTGAGACGACATATACTAACCACTCAGAGATGTTACTGCATTCTTTCAAGGCTTCCAGCTTTTGAATTGCACTTTGGTGTATTGAATAGCATCTTCACACAAGAAAGGCTAGAGCGATTGACAAGAAGTGTTGGAGATTTAAATTTAGAATTTGATGAAGGTAATAACTTAAAAGAAGAAAATCCAGAGGGCTACTCAGAGAGTGCTTTGGTGAGTGATGGACCAATAGAAGATACACTTGGTGAAAATCCAAGAATTTCTCCATTGAGAGCAGGAGACTCTACACCTGAAAACATTGTGGATGATGATCAACCAGAGCACCTAATGGTTGATGGGGAGCTGCAGACATATAAGGAGAGAGTCAACAATGATGATGTTTTGGTTGCTGATCATGTAACAGATAGTACAGCAGCCAAAGAAGATTCTGGCCCTACAAATTCTGAAACTAGTGATCAGTATGGAGATGCCTTTGCTACAAACAAACAGTCAGAAGACAAACATTTACCTAATGCTATTTTGCCCCTCCTGCGCTATTGCCAGTATGAAAGTTCTGAATCTTCCTGCAGTTTTCAAGGATCACCTTGTGAAGACAGAAATTTTAGGAGTGATGTTGATGATAATGAGACAGAAGAAGCATCTTTCTCCGGCCAAGAAGATTTAAATGAGTTAAATGATATTCTTGAATGGGCAAAGGAAAATAACCATGGACCACTACAAATTATAAGTGAGTATTACCGTTTAAGTTACCCTGCCAGGGGCTCATCACTTACATTTCATCCTTTGGAGCACTTGCATCCGTTGGAATACCAGAGATCAGCTGAGTCAGTTTTACGTCTTGCTGGCTCAACAGTTGATTTGAAAACGTTCAGTACTGGTCTGGAACTAGTTGATGCACATATAGCTCTTGTGGTAGAAGAGGCAAATGCATTATCTGTATGGGCTGTAGCTTGCTTGTGCGGTACATTGAGACTTGAAAATGTGTTAACGTTCTTTGCAGGAGTTCTGCTAGAGAAGCAGATAGTTGTTGTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTGTCAGTTATTCCCCTAATCCAGCCTTACCGGTGGCAAAGCCTACTAATGCCAGTTTTACCAAATGACATGCTTGACTTTTTAGATGCTCCTGTCCCTTATGTAGTTGGTATCAGGAACAAGACTAGTGATGTTCAGTCAAAGTTTACCAATGTTATTCTAGTTGATGCTGATAGAAACCAGGTGAAGTCACCAACAATACCGCAATTGCCAAGACAGAAAGAGCTAGTCTCTTCTTTACGTCCTTATCATTCAACTCTTGTTGGAGAAAGTTACTTGGGTAGGAGAAGGCCAGTATATGAATGCACGGAAATGCAGATTGAAGCTGCAAAGGGATTCCTTTCGGTGTTAAGATCTTACTTGGATTCTCTTTGCTGTAACATCCGTTCTCACACGATCACTAATGTACAATCCAATGACGATAAGGTATCATTGCTTCTGAAGGAGAGTTTCATTGACTCCTTCCCTTATCGGGATCGGCATTTTATGAAGCTTTTCGTGGATACACAACTTTTTTCTGTACATACAGACCTTGTTCTCTCTTTCTTACAAAAGGAATAG 2400 0.4092 MTGMSKEEGSASPSWGASFFMQTKEDVARAVAAAVNSPMSSKDDNSGSQLQRLQYQVARMLKGFSHTPDVENTNYNPEILTSLKRQWAANFQLQYMDHKTWKEPSRLFESMVIVGLHPNCDVQALQRQYHERKFEGSAKLRSALGYQSQSCVEPNIEPQVLFVYPPEKPLPLKCKNLLSFCFPGGLEVRAVERTPSMSELNEILFGQEHVKQRDLSFVFRLQGADNSTLYGCCVLVEELVEKPSGLLSLISDKQPSSSSLRRHILTTQRCYCILSRLPAFELHFGVLNSIFTQERLERLTRSVGDLNLEFDEGNNLKEENPEGYSESALVSDGPIEDTLGENPRISPLRAGDSTPENIVDDDQPEHLMVDGELQTYKERVNNDDVLVADHVTDSTAAKEDSGPTNSETSDQYGDAFATNKQSEDKHLPNAILPLLRYCQYESSESSCSFQGSPCEDRNFRSDVDDNETEEASFSGQEDLNELNDILEWAKENNHGPLQIISEYYRLSYPARGSSLTFHPLEHLHPLEYQRSAESVLRLAGSTVDLKTFSTGLELVDAHIALVVEEANALSVWAVACLCGTLRLENVLTFFAGVLLEKQIVVVCSNLGILSASVLSVIPLIQPYRWQSLLMPVLPNDMLDFLDAPVPYVVGIRNKTSDVQSKFTNVILVDADRNQVKSPTIPQLPRQKELVSSLRPYHSTLVGESYLGRRRPVYECTEMQIEAAKGFLSVLRSYLDSLCCNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRHFMKLFVDTQLFSVHTDLVLSFLQKE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00508 799 MobiDBLite consensus disorder prediction 397 412 - -
Vian1g00508 799 SMART uDENN_cls 104 237 IPR005113 -
Vian1g00508 799 MobiDBLite consensus disorder prediction 445 476 - -
Vian1g00508 799 MobiDBLite consensus disorder prediction 393 412 - -
Vian1g00508 799 Gene3D - 95 303 - -
Vian1g00508 799 ProSiteProfiles Tripartite DENN domain profile. 138 799 IPR037516 -
Vian1g00508 799 Pfam DENN (AEX-3) domain 547 673 IPR001194 -
Vian1g00508 799 MobiDBLite consensus disorder prediction 313 362 - -
Vian1g00508 799 PANTHER DENN DOMAIN-CONTAINING PROTEIN 2 40 789 - -
Vian1g00508 799 Pfam uDENN domain 158 235 IPR005113 -
Vian1g00508 799 Gene3D - 569 735 IPR043153 -
Vian1g00508 799 SMART DENN_cls 266 673 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00508 Vian-Chr1 4820267 4833574 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00508 - - gmx:100801645 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00508 1 4820267 4833574 Vian1g00508 1 4820267 4833574 ECH
Vian1g00508 1 4820267 4833574 Vian4g00345 4 3856652 3865757 PCT