Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00307 ATGGCGTGGCTGCTTCGCACCGCTAACTCTTCCCTCCTTAAACGTTCTTTCTTCCATTCCGACCTTCTGACGCGCTTTTGCTTCAAACCAGGACTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAACGGAGGTCTAAATCAGATGGAAGTGATTCAGGTGAAGAGAGCATGTCTAAGAAAGACGTTGCCTTACAGCAAGCTATTGATCAGATCACTTCCGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGGCACCTAAAAATATTCCTGTGGTGTCTACTGGTTCATTTGCTCTTGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGCTACTGTGCATTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGATTCAATTGGTGTAAATACTAAGAACTTGCTTCTTTCACAACCTGATTGTGGTGAACAAGCACTTGGCCTTGTGGATACCTTAATCCGGAGTGGTTCGGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTGCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCTCTTCGGAAATTGTGCCACTCTTTGTCTCTTTCCCAGTGTATATTGATTTTTATAAACCAGGTGAGGTCTAAGATTTCTACTTTTGGAGGATTTGGTGGTCCCACTGAAGTTACATGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTCTGGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACGGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAATACAAACTCATAAGGAAGAGTGGTTCCTTTTATGAATACAATGGCCAGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTTCTGGTGGACAGCGACAGTGTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATACGGCGCCGGAAGTTGACCCGGAGGAACAGGTGATGATCGAAGACGTTATGGAAGAAATGGTATCTCTTGATTCTACTGATGAAACTGCTTCTGATGCTGCTGCTGTTGTAGAAGCATAA 1284 0.4424 MAWLLRTANSSLLKRSFFHSDLLTRFCFKPGLLGTSQVLSFSTRKRRSKSDGSDSGEESMSKKDVALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLADSIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKYKLIRKSGSFYEYNGQNFHGKDALKRFLVDSDSVQELATKLREKILNTAPEVDPEEQVMIEDVMEEMVSLDSTDETASDAAAVVEA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00307 427 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian4g00307 427 SUPERFAMILY RecA protein, C-terminal domain 330 384 IPR023400 -
Vian4g00307 427 MobiDBLite consensus disorder prediction 44 64 - -
Vian4g00307 427 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vian4g00307 427 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 FunFam Recombinase RecA 92 390 - -
Vian4g00307 427 NCBIfam recombinase RecA 63 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian4g00307 427 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian4g00307 427 MobiDBLite consensus disorder prediction 44 61 - -
Vian4g00307 427 SMART AAA_5 116 290 IPR003593 GO:0016887
Vian4g00307 427 Gene3D - 93 390 IPR027417 -
Vian4g00307 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Vian4g00307 427 PANTHER RECA 43 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00307 Vian-Chr4 3423637 3428768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00307 K03553 - gmx:100798983 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00307 4 3423637 3428768 Vian4g00307 4 3423637 3428768 ECH
Vian1g00552 1 5212599 5219181 Vian4g00307 4 3423637 3428768 PCT