Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00552 ATGGCGAGGCTGCTTCGTAACACTTCCCTTCTCACACGCTCGCTATTCGTCCCTAAGAGATTTGAGCCGGGATTATTTGGCACTTCTCAGATTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCCAAATCTGATGGAAGTGACTCTGGTGAAGAAAACATGTCCAAGAAAGAGTTGGCCCTTCAGCAAGCTCTGGACCAAATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTGCCTGTTGTGTCTACAGGTTCTTTTGCTCTTGATATAGCACTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGTGGAAATATACGGGCCAGAGGCTTCTGGAAAAACAACCCTTGCTTTACATGTGATTGCAGAAGCACAGAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGACAAGAGACTTGCAGAGTCTATTGGGGTGAATACAGAAAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCTCTCAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCACTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCCTTATCACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACCTTTGGTGGATTTAGTGGACCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCCGTGCGTCTAAATATCAAGAGAACAGGATTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTGAATTTGGCAAGGGGATATGTAAAGAAACAGAGGTTATTGATCTAAGTGTACAACACAGACTAATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAATTTCCGTGGTAAGGATGCCCTGAAGAATTTCCTAGCTGAGAATTGTAGCGCATTAGAAGAACTTGAAACTAAGCTCAGAGAAAAGGTTCTTAATGTTGAAACAGAACAGACACAAGAACCAGATGTAATTAATGGAGATGTTACCGAAGAAATTGCCTCAGTTGATTCTACTGTTGAAGAAACAGCTGTTGTAGGAGCATGA 1257 0.424 MARLLRNTSLLTRSLFVPKRFEPGLFGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKRLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELEFGKGICKETEVIDLSVQHRLILKAGAMYYYNEQNFRGKDALKNFLAENCSALEELETKLREKVLNVETEQTQEPDVINGDVTEEIASVDSTVEETAVVGA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00552 418 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian1g00552 418 MobiDBLite consensus disorder prediction 38 55 - -
Vian1g00552 418 PANTHER RECA 34 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vian1g00552 418 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vian1g00552 418 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 FunFam Recombinase RecA 86 386 - -
Vian1g00552 418 Coils Coil 370 390 - -
Vian1g00552 418 Gene3D - 87 388 IPR027417 -
Vian1g00552 418 MobiDBLite consensus disorder prediction 36 56 - -
Vian1g00552 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Vian1g00552 418 CDD RecA 88 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Vian1g00552 418 SMART AAA_5 110 284 IPR003593 GO:0016887
Vian1g00552 418 SUPERFAMILY RecA protein, C-terminal domain 326 380 IPR023400 -
Vian1g00552 418 NCBIfam recombinase RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00552 Vian-Chr1 5212599 5219181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00552 K03553 - gmx:100781271 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00552 1 5212599 5219181 Vian1g00552 1 5212599 5219181 ECH
Vian1g00552 1 5212599 5219181 Vian4g00307 4 3423637 3428768 PCT