LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00293	ATGCACCACTTTCACCAAACATATCTATTTTTCCCTCTCTATTGCTACACAAAACCAAGGCATATCATCATCATCATCACCACTTTCGTTGAGATGAAAAATATTGGGTTTCTTGCGGTGGTGGTAGCTACGTTTGTGGTGGCAGCCACCGCCGGTAGCTTCTTCCAAGACTTTGAGTTAACATGGGGTGGTGGTCGTGCCAAAATCCTTGAAAATGGAAACCTTCTTACTCTCTCCCTAGACAAGGCTTCTGGCTCCGGCTTTCGTTCCAAAAACGAGTACTTGTTTGGAAAAATTGACATGCAGCTCAAACTCGTGCCTGGAAACTCAGCTGGCACTGTCACAGCCTATTACCTGTCTTCTCTGGGACCTACTCATGATGAAATAGACTTCGAATTTTTGGGCAACTTGAGTGGTGATCCTTACACTCTTCACACCAACGTATTCAGCCAAGGGAAAGGGAATAGAGAACAACAGTTCCATCTATGGTTTGACCCCACCAAGGACTTCCACACATACTCCGTCCAATGGAATCCTGCAAGCATCATATTTTCTGTGGATGGAACACCGATAAGGGAGTTCAAGAATTTGGAGACAAAGGGTGTTCCATTCCCCAAGAACCAACCTATGAGAATATACTCTAGCTTATGGGATGCTGAGGATTGGGCCACGAGAGGTGGGCTTGTGAAAACGGACTGGAGCCAGGCCCCATTCACGGCCTCATACAGAAACTTCAATGCAGAAGCTTGTGTTTGGTCTTCTTCAGGTTCTTCTTCGTGTTCTTCCTCCTCTGGCCAATCACTGGACGCCACGGGGCAAGCCAAGCTTCGTTTGGTGCAAAAGAACTACATGGTTTACAACTACTGCACTGATATCAGACGTTTTCCACAAGGGCTCCCTCCAGAATGTTCCTTTGCTTGA	921	0.4658	MHHFHQTYLFFPLYCYTKPRHIIIIITTFVEMKNIGFLAVVVATFVVAATAGSFFQDFELTWGGGRAKILENGNLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWDAEDWATRGGLVKTDWSQAPFTASYRNFNAEACVWSSSGSSSCSSSSGQSLDATGQAKLRLVQKNYMVYNYCTDIRRFPQGLPPECSFA	306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00293	306	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	261	303	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Vian4g00293	306	SUPERFAMILY	Concanavalin A-like lectins/glucanases	57	305	IPR013320	-
	Vian4g00293	306	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	128	138	IPR008263	GO:0004553\|GO:0005975
	Vian4g00293	306	Pfam	Glycosyl hydrolases family 16	56	234	IPR000757	GO:0004553\|GO:0005975
	Vian4g00293	306	PRINTS	Glycosyl hydrolase family 16 signature	162	179	IPR008264	GO:0004553\|GO:0005975
	Vian4g00293	306	PRINTS	Glycosyl hydrolase family 16 signature	86	104	IPR008264	GO:0004553\|GO:0005975
	Vian4g00293	306	PRINTS	Glycosyl hydrolase family 16 signature	144	157	IPR008264	GO:0004553\|GO:0005975
	Vian4g00293	306	PIRSF	EndGlu_transf	19	306	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vian4g00293	306	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	48	303	IPR044791	GO:0004553
	Vian4g00293	306	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	48	242	IPR000757	GO:0004553\|GO:0005975
	Vian4g00293	306	FunFam	Xyloglucan endotransglucosylase/hydrolase	40	305	-	-
	Vian4g00293	306	Gene3D	-	39	305	-	-
	Vian4g00293	306	CDD	GH16_XET	52	303	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00293	Vian-Chr4	3190516	3191798	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g00293	32	303	Glycoside Hydrolase	AT4G25810	70.775	1.91e-149	419

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00293	K14504		-	gmx:732603	499.204

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g00572	1	5476747	5478050	Vian4g00293	4	3190516	3191798	PCT