Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g00572 | ATGACAAATAAGATATTTCTTGCCCTTCTTTTCCTAGGCTATGTGGTTGCGGTCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACTTGGGGTGATGGTCGTGCCAAAATCCTCAACAATGGAGAACTTCTCACTCTGTCCCTAGACAAGGCCTCTGGCTCTGGATTTCGTTCCAGGAATGAATACTTGTTTGGAAAAATTGACATGCAGCTAAAGCTCGTTCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGAAATGTTCATGATGAAATAGATTTTGAATTTCTGGGCAACTTGAGTGGTGATCCTTATATTCTTCATACAAATGTATTCACACAAGGGAAAGGTAACAGGGAACAACAGTTCTATCTGTGGTTCGACCCCACCAAAGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAATTCAAGAATCTTGAATCAAAAGGGGTTTCTTTTCCCAAAAACCAAGCCATGAGGATATATTCAAGCCTTTGGAATGCTGATGACTGGGCCACAAGAGGAGGTTTAGTGAAAACTGATTGGAGTCAAGCCCCATTCACAGCCTCTTACAGGAACTTCAATGCTCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCATCTTGTTCATCTAACAATCCATCATCAAACCAATCATGGATGAAGCAATCAATGGATGCAACAGGGCAAGCCAGAATTCAGTGGGTGCAAAAGAACTACATGATATACAACTACTGCACAGATACCAAGCGATTCCCACAAGGTCTTCCTCCTGAATGCACAATCGCATGA | 852 | 0.4249 | MTNKIFLALLFLGYVVAVSAGNFNQDFEITWGDGRAKILNNGELLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGNVHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVWTSSSGSSCSSNNPSSNQSWMKQSMDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g00572 | 283 | PIRSF | EndGlu_transf | 1 | 283 | IPR016455 | GO:0010411|GO:0016762|GO:0042546 | |
| Vian1g00572 | 283 | Pfam | Xyloglucan endo-transglycosylase (XET) C-terminus | 236 | 280 | IPR010713 | GO:0005618|GO:0016762|GO:0044042|GO:0048046 | |
| Vian1g00572 | 283 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 22 | 282 | IPR013320 | - | |
| Vian1g00572 | 283 | ProSiteProfiles | Glycosyl hydrolases family 16 (GH16) domain profile. | 17 | 211 | IPR000757 | GO:0004553|GO:0005975 | |
| Vian1g00572 | 283 | FunFam | Xyloglucan endotransglucosylase/hydrolase | 10 | 282 | - | - | |
| Vian1g00572 | 283 | CDD | GH16_XET | 19 | 280 | IPR016455 | GO:0010411|GO:0016762|GO:0042546 | |
| Vian1g00572 | 283 | ProSitePatterns | Glycosyl hydrolases family 16 active sites. | 97 | 107 | IPR008263 | GO:0004553|GO:0005975 | |
| Vian1g00572 | 283 | PRINTS | Glycosyl hydrolase family 16 signature | 113 | 126 | IPR008264 | GO:0004553|GO:0005975 | |
| Vian1g00572 | 283 | PRINTS | Glycosyl hydrolase family 16 signature | 55 | 73 | IPR008264 | GO:0004553|GO:0005975 | |
| Vian1g00572 | 283 | PRINTS | Glycosyl hydrolase family 16 signature | 131 | 148 | IPR008264 | GO:0004553|GO:0005975 | |
| Vian1g00572 | 283 | Gene3D | - | 11 | 282 | - | - | |
| Vian1g00572 | 283 | PANTHER | XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED | 20 | 280 | IPR044791 | GO:0004553 | |
| Vian1g00572 | 283 | Pfam | Glycosyl hydrolases family 16 | 24 | 203 | IPR000757 | GO:0004553|GO:0005975 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g00572 | Vian-Chr1 | 5476747 | 5478050 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g00572 | 5 | 283 | Glycoside Hydrolase | AT4G25810 | 73.835 | 1.08e-154 | 431 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g00572 | K14504 | - | gmx:100807063 | 540.036 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian1g00572 | 1 | 5476747 | 5478050 | Vian4g00293 | 4 | 3190516 | 3191798 | PCT |