Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00285 ATGATCAAAGGTAGCGACGTGTACGATGTTGTGTCAGCGCTTGTGCCTCTCTACGTGGCTTTGTTTTTAGCATATGGCTCCGTCCGTTGGTGGAAGATCTTCAGCCCAGAACAGTGCTCTGGCATAAACCGTTTTGTGTCTGTTATTGCAGTGCCCTTCCTCTCTTTCCATTTCATATCCAACAATAACCCTTACACCATGAACTTCAGGTTCTTAGCAGCCGACTGTCTTCAAAAGGTTGTGATCTTGGCTGCACTTGTTCTGTGGAACACTTTCACAAAATGGGGTAGCATTGACTGGACCATCACACTGTTCTCAATCTCCACTCTCCCCAACACGCTCATCATGGGTGTTCCTCTTCTGAAAGCCATGTATGGAGACTTCACAGCCACCCTCATGATCCAAATTGTGGTTTTTCAGAGTGTGATTTGGTACACTCTCTTGTTGTTCATGTTTGAATACAGAGGGGCCAAGCTTCTCATCTCAGAGCAATTCCCTGACACTGCTGGAGCCATTGCCTCCCTAAGGGTTGATTCAAGTGTGAGCTCTCTCAATGGAAGAGAACCATTGCATGCTGATGCAGAAATTGGAGAAAACGGAGAACTCCACGTGGTGTTGAGAAGTATGTCACGTTCTACGTCCGTAAACATGCCTTCTTCATTCCACAAGTCATATTCAACACCTAGACCATCAAATTTTACTGGAGAAAAACCTAATCTCCAAAATGCAGCTTTTGTGGATATGCCTCAGGAAAAGTTTTGGAGGAGCAAGAGTGACGGTTGCGGGGTTTCTAGAGGTGGTTTTGTTTACTCATACCCCTCACAAAATCTAGGGTTTGTAGGGTTTGATGGTGGTTTTGTTTCTTCACACATTTATCCAAAACCAGAGTTTCCAGGGTTTAGTAGTGGTTTGTCTACTCCATACCCGTCTCCAAAACCAGTGATTGCAGGGTCTAAAAATTGTTTATACACGTTTGGTTGCGGCTTGAATGCATCATCAAATTCTCATGTTAATCAGAGACATGAAATAAACAGAGTTGGCTCCTTTTCCACCATTGGACCTTCCAAATTTCCACTCGAAACTGCTGCTTCAAAAGCAGTACATGAACATGTAAGTGATGAAGAAGCAGAACATAGCGCAAAGGGGAAACAAAAAGAGGTGAAAAATGAAGAAGTTGAGACAAACAAAAATCAACAAATGCCACGTGCTAATGTCATGTTAAAACTTATTCTGATAATGGTTTGGAGGAATCTGATAAGAAACCCTAATACCTATGCAAGTGTTTTAGGTCTCATTTGGTCTCTCATATTTTACAGGTGGAGCATCAAAGTGCCATCTATTATAAAAGGTTCCATTGAAATAATTTCTAACACAGGACTAGGAATGGCCATGTTCAGTCTTGGTCTATTCATGGCATTACAACCTAAGATCATTACTTGTGGAAAAACTCTGGCTTCACTTGCATTCGCAATTAAGTTCTTGGTTGGTCCATTTATAATTCTTGCAGCCTCCAAAATAATTGGTATCCATGGAGTTCTTTTACGAGTTACAATTGTTCAGGCTGCTCTTCCCCAAGGAATTGTCCCATTTGTATTTGCAAAAGAATATAATCTTCATGCAGACGTACTCAGCACAGCGGTTATCTTCGGAATGGTGGTTGCGTTGCCCACATCGAAGAGTTCTTCATGGATGGAATGTGATTCCTCTCTTGTGTTTGTTGCTTTCAAGAACACCTATTATGATCCATTAGAGTTTGTCTACCCTTATTTTGCTTCAACCATGATCAAAGGTAGCGAGCTGTATGATGTAGTGGCAGCCATTGTGCCGCTCTATGTGGCTTTGATCTTAGCATACGGCTCCGTCCGTTGGTGGAAGATCTTCACCCCAGAACAGTGCCTTGGCATAAACCGTTTTGTGTCTGTTTTTGCAGTGCCCTTCCTCTGTTTTCATTTCATATCCAACAATGACCCTTACACCATGAACTTCAGGTTCTTAGCCGCGGACTCTCTTCAAAAGATTGTGATTTTGGTTGCACTTGTTCTGTGGAACTCTTTCACAAAGTGGGGTAGCCTTGACTGGACCATCACACTGTTCTCACTCTCCACTCTCCCCAACACGCTCATCATGGGGATTCCTCTTCTCAAAGCCATGTACGGAGACTTCACTGCCACCCTCATGATCCAAATTGTGGTTTTTCAGAGTGTGATTTGGTACACACTCTTGCGGTTCATGTTTGAATATAGAGCGGCTAAGCTACTCATTCTGGAGAATTTCCCTGATACAGCAGGTACTATATCCTCCTTTAGGGTTGATTCACATGTCGGTTCTCTGGGTGGTCGAGAGATGCTAGAAACTAATGCAGAAACCGGAGAAGATGGGAATGTTCACGTGGTGGTGAGGAGCATGTCACGTTCTGTGTCCGTTGCATCAAACCTCACTGGGATTGAGATCTATTCAGAGGAGTCATCTAGAGAACCAAAGCTGGGAAGATCACATTTTAGTGTCACAGATTTGCACCCACATGGTCTCAAAAGAGAGAGAATGTCGAAAATTCATGAAAAGAGTTTTCCAAGGAGCAAGAGCGTTGGTCATCATTTGGTTTCTCCGTATCCGTTTCTGAAACCAACAGGGGACAAGGAGACAAACAGTAACAAGGGTTTGCACATGTTTATGTCAGCTTCACCAACTTCTGATCCTAATGTGAGACATGCTGCGAATAATAGAGTTGGATCTTACGAGTTTGAGACCATGGAATCTTCAAACGGTGTTGATTTTGCAAGCGAAACTGGTTCATCCAAAGATGTTGAAAATGAAGGTGTTGTATTGAGGAATCAGATGAACGGCAACAGTGAAGGAGATTCAAACAGAAGGACAGAAATGCCTCGTGCTAGTGTCATGATAAAGCTTATTCTCACCATGGTTTGGAGGAATCTCATAAGAAACCCTAATACCTACGCAAGTGTTTTGGGTCTTGTTTGGTCTCTCATATTTTCTAGATGGAACTGGAAGATGCCATCTATAATAAAAGGTTCCATAGACATAATATCTAATGCTGGGTTGGGAATGTCCATGTTCAGTTTAGGTCTGTTCATGGGATTACAACCGAAAATCATTACTTGTGGGAAAACCCGAGCTATGATTTCAATGTTAGTTAAGTTCTTGGTTGGTCCAATGGTGATTCTTGCAACCTCCAAAGTCATGGATATCAATGGAGTTCTTTTAAAAGTTGCAGTGGTCCAGGCTTCTCTTCCAGCGGGTATTATTCCCTTTATATTTGCCAAAGAATATAATCTCCATGCAGACATACTAGGCACAGCGGTTATCTTTGGAATGGTGGTTGCTTTACTAGTAACAATAGTATACTACGTGATTCTTTGA 3378 0.4245 MIKGSDVYDVVSALVPLYVALFLAYGSVRWWKIFSPEQCSGINRFVSVIAVPFLSFHFISNNNPYTMNFRFLAADCLQKVVILAALVLWNTFTKWGSIDWTITLFSISTLPNTLIMGVPLLKAMYGDFTATLMIQIVVFQSVIWYTLLLFMFEYRGAKLLISEQFPDTAGAIASLRVDSSVSSLNGREPLHADAEIGENGELHVVLRSMSRSTSVNMPSSFHKSYSTPRPSNFTGEKPNLQNAAFVDMPQEKFWRSKSDGCGVSRGGFVYSYPSQNLGFVGFDGGFVSSHIYPKPEFPGFSSGLSTPYPSPKPVIAGSKNCLYTFGCGLNASSNSHVNQRHEINRVGSFSTIGPSKFPLETAASKAVHEHVSDEEAEHSAKGKQKEVKNEEVETNKNQQMPRANVMLKLILIMVWRNLIRNPNTYASVLGLIWSLIFYRWSIKVPSIIKGSIEIISNTGLGMAMFSLGLFMALQPKIITCGKTLASLAFAIKFLVGPFIILAASKIIGIHGVLLRVTIVQAALPQGIVPFVFAKEYNLHADVLSTAVIFGMVVALPTSKSSSWMECDSSLVFVAFKNTYYDPLEFVYPYFASTMIKGSELYDVVAAIVPLYVALILAYGSVRWWKIFTPEQCLGINRFVSVFAVPFLCFHFISNNDPYTMNFRFLAADSLQKIVILVALVLWNSFTKWGSLDWTITLFSLSTLPNTLIMGIPLLKAMYGDFTATLMIQIVVFQSVIWYTLLRFMFEYRAAKLLILENFPDTAGTISSFRVDSHVGSLGGREMLETNAETGEDGNVHVVVRSMSRSVSVASNLTGIEIYSEESSREPKLGRSHFSVTDLHPHGLKRERMSKIHEKSFPRSKSVGHHLVSPYPFLKPTGDKETNSNKGLHMFMSASPTSDPNVRHAANNRVGSYEFETMESSNGVDFASETGSSKDVENEGVVLRNQMNGNSEGDSNRRTEMPRASVMIKLILTMVWRNLIRNPNTYASVLGLVWSLIFSRWNWKMPSIIKGSIDIISNAGLGMSMFSLGLFMGLQPKIITCGKTRAMISMLVKFLVGPMVILATSKVMDINGVLLKVAVVQASLPAGIIPFIFAKEYNLHADILGTAVIFGMVVALLVTIVYYVIL 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00285 1125 MobiDBLite consensus disorder prediction 370 395 - -
Vian4g00285 1125 MobiDBLite consensus disorder prediction 370 397 - -
Vian4g00285 1125 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 557 - -
Vian4g00285 1125 NCBIfam auxin efflux carrier 594 1125 IPR014024 -
Vian4g00285 1125 NCBIfam auxin efflux carrier 1 557 IPR014024 -
Vian4g00285 1125 Pfam Membrane transport protein 603 1122 IPR004776 GO:0016020|GO:0055085
Vian4g00285 1125 Pfam Membrane transport protein 10 557 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00285 Vian-Chr4 3087653 3098285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00285 1 556 Organic Solute Cotransporters AT1G70940 46.190 1.40e-172 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00285 K13947 - gmx:100788935 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00285 4 3087653 3098285 Vian4g00285 4 3087653 3098285 ECH
Vian1g00584 1 5625960 5628547 Vian4g00285 4 3087653 3098285 PCT