Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00584 ATGATAACCATTAAGGATATTTATGATGTTTTCGCGGCTATTGTGCCCCTGTACGTGGCTATGATATTAGCATATGGTTCAGTTCGGTGGTGGAAAATTTTCACACCTGATCAATGTTCTGGTATAAACCGCTTTGTTGCGGTCTTTGCAGTTCCACTGCTTAGTTTCCACTTCATCTCCTCCAATGACCCTTATGCTATGAACTACCACTTCATAGCAGCTGATTCTCTTCAGAAAGTTGTCATTCTGGGTGCTCTCTTTCTATGGAACACCTTCACAAAACATGGCAGCCTAGACTGGACCATCACCCTGTTCTCTCTTTCCACTCTTCCAAACACCCTTGTCATGGGGATCCCTCTATTGAAGGCCATGTACGGCGACTTTTCAGGGAGCCTCATGGTTCAAATTGTGGTGCTGCAAAGTGTCATATGGTACACTCTCATGTTGTTCTTGTTTGAATATAGAGGTGCCAAACTCCTCATCACAGAACAGTTCCCTGAGACTGCAGGCTCCATCACCTCCTTCAGGGTTGACTCAGATGTTGTTTCACTCAACGGTAGAGAGCCACTGCAAACTGATGCTGAGATAGGAGAAGATGGAAAGCTCCATGTGGTGGTTAAGAGATCAGCAGCTTCTTCTATGATATCTTCCTTCAACAAATCCCATTTAACTTCTATGACTCCTAGAGCATCTAATCTCACTGGGGTAGAGATCTATTCCGTTCAGTCATCAAGAGAACCAACCCCAAGAGCTTCTAGTTTCAATCAAACAGACTTTTATGCCATGTTTGCAAGCAAGGCACCGAGTCCAAAGCATGGCTACACAAACAGTTTCCAGAGTAATAGTGGTATTGGTGATGTTTACTCGTTGCAATCTTCCAAGGGGGCAACACCAAGGACTTCTAATTTTGAAGAGGAGATGTTGAAGATGCACAAAAAGAGAGGAGGGAGAAGCATGAGTGGAGAGTTGTTTAATGGAGGTTTGGTTTCTTCTTACCCACCTCCGAATCCAATGTTTTCAGGGTCCACAAGTGCTGGTGGCCTCAAAAAGAAAGATAGCACTGGTGGCAGTGCTGCACCTAACAAGGAGTTACACATGTTTGTTTGGAGTTCAAGCGCATCGCCGGTTTCTGAGGGGAATTTGAGGCATGCAGTTAACAGAGCTGCCTCTACCGACTTTGGAACAGTTGATCCTTCCAAGGCTGTTCCACACGAAACTATTGCTTCCAAAGCTGTTCAAGAATTGATTGAGAACATGAGTCCTGGTCGTAGAGGGAGTGGAGAGAAGGAGCTTGAAATGGATGAGGGAGCGAAATATCCCACAAGTGGATCTCCATACACCTGCCAGAAGAAGGTGGACATAGAAGGCAATGCAAACAAAAACCAACAGATGCCACCGGCTAGTGTCATGACAAGACTCATCCTCATCATGGTTTGGAGAAAACTAATAAGAAATCCCAATACCTACTCCAGTCTTCTGGGACTCACATGGTCTCTCGTATCATTTAGGTGGCACATTGAAATGCCAACTATTGTAAAAGGTTCCATCTCAATACTGTCCGATGCTGGTCTAGGAATGGCCATGTTCAGTCTAGGTCTGTTCATGGCATTACAACCCAAGATCATTGCCTGTGGAAAATCTGTTGCAGCATTTTCTATGGCTGTTAGGTTCTTGACAGGTCCAGCGGTTATTGCTGCAACCTCCATAGGCATTGGACTCCGTGGAGTTCTTTTGCATGTTGCAATTGTCCAGGCTGCCCTTCCCCAAGGTATCGTTCCCTTTGTGTTTGCCAAAGAATACAATCTCCATGCAGATATTCTTAGTACTGCGGTTATATTTGGAATGCTGATTGCATTGCCCATAACCATACTCTACTACGTGCTGCTTGGACTCTAA 1896 0.4494 MITIKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFIAADSLQKVVILGALFLWNTFTKHGSLDWTITLFSLSTLPNTLVMGIPLLKAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNSGIGDVYSLQSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSYPPPNPMFSGSTSAGGLKKKDSTGGSAAPNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFGTVDPSKAVPHETIASKAVQELIENMSPGRRGSGEKELEMDEGAKYPTSGSPYTCQKKVDIEGNANKNQQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLTWSLVSFRWHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPITILYYVLLGL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00584 631 MobiDBLite consensus disorder prediction 336 350 - -
Vian1g00584 631 Pfam Membrane transport protein 10 626 IPR004776 GO:0016020|GO:0055085
Vian1g00584 631 MobiDBLite consensus disorder prediction 336 360 - -
Vian1g00584 631 NCBIfam auxin efflux carrier 1 631 IPR014024 -
Vian1g00584 631 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00584 Vian-Chr1 5625960 5628547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00584 102 631 Organic Solute Cotransporters AT5G57090 75.000 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00584 K13947 - gmx:100305383 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00584 1 5625960 5628547 Vian1g00584 1 5625960 5628547 ECH
Vian1g00584 1 5625960 5628547 Vian4g00285 4 3087653 3098285 PCT