Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00282 ATGAACATGTACCATCTGCAACAGCTTCATAATCATCAACCTGTGATGAGGAAGAGGGAGAGAAACAAAGGCTTGGAGAAAGAGAGGCTTCAGGTCATGGATTTGAGTGGCATGTCTTTGGACTCTCTTCCAAAACCTTCTCTTGATTTGGCCACCATTTCCAAGTTGGACTTATCTAACAACAATCTCCAGGAGATTCCTGAATCCTTAACTGCGAGACTGCTAAACATGGAGGTGTTGGATGTTCGGTCCAACCAGCTTAAGTCTCTTCCTAATTCCATTGGTTGTCTCTCTAAGCTTAAGGTTTTAAATGTCTCTGGCAACTTCATCGAATTCCTCCCCAAAACCATTGAGAATTGCAGAGCATTGGAAGAACTGAATGCGAACTTCAACAAGCTGAGCAAGTTACCAGACACAATAGGGTTTGAGCTGATAAACCTGAAGAAGCTCTCGGTGAACTCGAACAAGCTGGTTTTTCTTCCTAGCTCGACCTCACACCTAACATCATTGAAGGTTCTGGATGCACGGTTGAACTGCCTAAGGGCACTTCCGGAGGACCTCGAGAACCTCATCAACCTCGAGACACTGAATGTGAGCCAGAACTTCCAGTACTTGGAAACCCTCCCTTATTCCATAGGGCTCCTCTTGTCCCTGGTTGAACTTGATGTCAGCTACAACAACATCAAGACCTTGCCTGAATCCATTGGGTGCCTCAAGAACCTGAAGAAGCTAAGTGTTGAAGGGAACCCTCTGGTTTGTCCCTCGGTGGAGGTGGTGGAGCAGGGCCTGCACGTGGTGATGGAGTTCATGCAGCATAAGATGAACTCGAGTGATCAACGCCCAGCGAAGAAAAGGTGGTGGATGATGAAGATGGTGAAGTGTGGAACCTTCAGTAAGCAAGTGAGAGGTGGGAAACGACCAGAACATGAAGGTTACAACATGCTTAAGCACCAGAAGATCAATGGTCTTGCTTCGCCAGGCTTCATGGGAATGCTTTCACCTCTTCGCTTCTTCTCGTCACCCCGCCATTCCTTCGGCTGA 1041 0.4736 MNMYHLQQLHNHQPVMRKRERNKGLEKERLQVMDLSGMSLDSLPKPSLDLATISKLDLSNNNLQEIPESLTARLLNMEVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNFIEFLPKTIENCRALEELNANFNKLSKLPDTIGFELINLKKLSVNSNKLVFLPSSTSHLTSLKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLVELDVSYNNIKTLPESIGCLKNLKKLSVEGNPLVCPSVEVVEQGLHVVMEFMQHKMNSSDQRPAKKRWWMMKMVKCGTFSKQVRGGKRPEHEGYNMLKHQKINGLASPGFMGMLSPLRFFSSPRHSFG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00282 346 ProSiteProfiles Leucine-rich repeat profile. 52 73 IPR001611 GO:0005515
Vian4g00282 346 Gene3D Ribonuclease Inhibitor 1 139 IPR032675 -
Vian4g00282 346 ProSiteProfiles Leucine-rich repeat profile. 217 238 IPR001611 GO:0005515
Vian4g00282 346 ProSiteProfiles Leucine-rich repeat profile. 76 97 IPR001611 GO:0005515
Vian4g00282 346 SMART LRR_typ_2 167 190 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 74 96 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 50 73 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 97 120 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 144 166 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 215 238 IPR003591 -
Vian4g00282 346 SMART LRR_typ_2 121 143 IPR003591 -
Vian4g00282 346 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g00282 346 Pfam Leucine rich repeat 53 108 IPR001611 GO:0005515
Vian4g00282 346 Gene3D Ribonuclease Inhibitor 140 300 IPR032675 -
Vian4g00282 346 PANTHER - 144 280 - -
Vian4g00282 346 SMART LRR_bac_2 97 116 - -
Vian4g00282 346 SMART LRR_bac_2 190 211 - -
Vian4g00282 346 SMART LRR_bac_2 144 163 - -
Vian4g00282 346 SMART LRR_bac_2 50 69 - -
Vian4g00282 346 SMART LRR_bac_2 167 186 - -
Vian4g00282 346 SMART LRR_bac_2 74 93 - -
Vian4g00282 346 SMART LRR_bac_2 120 139 - -
Vian4g00282 346 SMART LRR_bac_2 215 234 - -
Vian4g00282 346 SUPERFAMILY L domain-like 30 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00282 Vian-Chr4 3064669 3067449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00282 43 338 Receptor kinase-like Gene Family AT5G46330 30.330 4.06e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00282 - - gmx:100776295 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00282 4 3064669 3067449 Vian4g00282 4 3064669 3067449 ECH
Vian1g00587 1 5651586 5654769 Vian4g00282 4 3064669 3067449 PCT