Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00587 ATGATGTACGAGCAACAGCAACGTTTTCAGCAGCCCATGTCTGTGAAGGTCGATTTGAGAAAGAAAACCGAGAGAAGGAAAGCCGTAGAGGAAGAGAGGCTTGAAATAGTAGACTTGAGTGGCATGTCCTTGGATTCCCTTCCCAACCCCTCTCTTAATTTAGCCACCATTTGCAAGTTGGACCTCTCTAATAACAATCTTCAGAATATACCAGAGTCCTTAACAGCGAGACTGCTGAACATGGTGGTGTTGGACGTGCACTCCAATCAGCTTAGGTACCTTCCCAACTCCATTGGTTGCCTCTCAAAGCTCAAGGTTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAAAATTGCAGAAGCTTAGAAGAACTGAATGCGAACTTCAACAAGTTGATCCAGCTTCCAGAGAACATAGGGTACGAGCTGATAAACCTGAAGAAGCTATCGGTGAACTCTAACAAGCTGGTGTTCCTTCCTCGCTCGACCTCTCATCTGACCGCTCTGAAGATTCTGGACGTGCGTTTGAACTGCCTGAGATCTCTCCCAGAAGATCTCGAGAACCTGATAAACCTAGAAACTCTGAATGTGAGCCAGAACTTCCAGTACCTGGATTCTCTACCCTACTCGGTGGGGCTCCTCCTATCCCTGGTGGAACTAGACGTCAGCTACAACAAGATCAGATCATTGCCGGACTCCGTTGGGTGCCTGAAGAAGTTGCACAAGCTGAGCGTGGAAGGGAACCCTCTGAGTTCGCCGCCGCCGGAAGTGATGGAGCAGGGATTGCATGCGGTGAAGGAGTACCTGTGCCAGAAGATGAACGCGGGCCATCAGAGCCCCACGAAGAAGAAGTCGTGGATGGGGAAGCTGGTGAGGTATAGCACCTTCAATGGACTCAACAGCAGAGGTGTGGGCCGCGAGGAACGTGAATCCTTCATCATGCCTGATTATAGACCCATCAATAGCCTCGCCTCGCCGCGCTACACCGGCATGTTCTCACCTCGTCGCCTCTTCTCACCCCGCAATTACTTCAGCGCCTGA 1056 0.5028 MMYEQQQRFQQPMSVKVDLRKKTERRKAVEEERLEIVDLSGMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRYLPNSIGCLSKLKVLNVSGNLIEYLPKTIENCRSLEELNANFNKLIQLPENIGYELINLKKLSVNSNKLVFLPRSTSHLTALKILDVRLNCLRSLPEDLENLINLETLNVSQNFQYLDSLPYSVGLLLSLVELDVSYNKIRSLPDSVGCLKKLHKLSVEGNPLSSPPPEVMEQGLHAVKEYLCQKMNAGHQSPTKKKSWMGKLVRYSTFNGLNSRGVGREERESFIMPDYRPINSLASPRYTGMFSPRRLFSPRNYFSA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00587 351 Gene3D Ribonuclease Inhibitor 2 144 IPR032675 -
Vian1g00587 351 Gene3D Ribonuclease Inhibitor 147 276 IPR032675 -
Vian1g00587 351 PANTHER - 37 257 - -
Vian1g00587 351 Pfam Leucine rich repeat 150 205 IPR001611 GO:0005515
Vian1g00587 351 Pfam Leucine rich repeat 59 114 IPR001611 GO:0005515
Vian1g00587 351 SMART LRR_bac_2 171 190 - -
Vian1g00587 351 SMART LRR_bac_2 219 238 - -
Vian1g00587 351 SMART LRR_bac_2 101 120 - -
Vian1g00587 351 SMART LRR_bac_2 124 143 - -
Vian1g00587 351 SMART LRR_bac_2 148 167 - -
Vian1g00587 351 SMART LRR_bac_2 54 73 - -
Vian1g00587 351 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Vian1g00587 351 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Vian1g00587 351 SMART LRR_typ_2 242 265 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 148 170 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 78 100 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 54 77 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 125 147 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 219 241 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 171 194 IPR003591 -
Vian1g00587 351 SMART LRR_typ_2 101 124 IPR003591 -
Vian1g00587 351 SUPERFAMILY L domain-like 34 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00587 Vian-Chr1 5651586 5654769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00587 52 265 Receptor kinase-like Gene Family AT5G51350 30.942 3.72e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00587 - - gmx:100783239 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00587 1 5651586 5654769 Vian1g00587 1 5651586 5654769 ECH
Vian1g00587 1 5651586 5654769 Vian4g00282 4 3064669 3067449 PCT