Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00270 ATGGCCACCGCACAACCACTCCAGAACGGTTCCGCCGGCAACCTACTAACACCGGACCATGTCTCCGCCGCACAGCCACCGGCCGAGGCGGAGGCTGACACCACTGCGGCGGCGCCTCCTCCGGAGAGGAGGTGGCTAGGGTGGCCTGGGGATTGCGTATTCCGTCTCATCGTGCCAGTGGGGAAGGTTGGGAGCATCATAGGGCGCAAGGGAGAACTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTTGACGCTCCTCTTGGCACTCCTGATCGAATTGTACTTGTATCCGGGAGGGAAGAGACAGAGGCAGCCCTTTCCCCTGCAATGGATGCGGTGATAAGGATATTCAAGCGTGTCTTTGGATTATCTGAAATTGATTCTGAGAATAAAGAATCTACTGCTGGTCTTGCATTTTGTTCCATCCGTCTATTGGTTGCATCGACACAGGCTATTAGTTTGATTGGAAAGCAAGGCTCGTTAATAAAATCTATCCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGGTATGCTTCCTATTTTCTGCATGGATATAATGCAATCATTTGGGTTTCTTCTGCATGCGAATCCTTTAATGCGCACAGACACATATTATGGGGAGATATTGTATGCTACCACTACTTTTATATGTTATGTTGACATTTTCATCTTGGCTGGAGTGACAGTTTTCCTTCAAGAAGGTAAAGAGCGAAGTACAGTTCAAGATGAGGTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAACCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTGTTTGAGAGAAATTTCAATGCACCAATCTCGCAAGATCGTCAAGCAGAGGCCTGGTCTGACAAGTCATTGTTGAATAGTACTTCACGTACCAGTGTATTTCCCGATATGCCTCTTCCAACAAAAAGGGATTCTATCTTAGCTGAGCGTGAAAGTCAATTGGACTCATTGCTCCCTTCTTCCACCATGTCTCTCTATGGGCAGGATTCTTCACTTTCTGGTGTTCGTTCTTCTGCCCTAGGCCGTGTTAGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCAGAAGACATCATTGGTATTCAAGGGACTAATATTGATTACATTCGTCGCACCAGTGGTGCTGTATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCATTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCGCAACAGTTAATTCAGGATTTTATAAGCACTCACAAAGAACCTGTCAGTATGAATTACGGCAGGTTAGATGCAGGTTCGAGGTCTTCGTACTCTCAATTGGGCACTGCATCACGCCTCCCATCTTCGTTGTCATCACAACCATACACAGGTTATGGATCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1524 0.4619 MATAQPLQNGSAGNLLTPDHVSAAQPPAEAEADTTAAAPPPERRWLGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGREETEAALSPAMDAVIRIFKRVFGLSEIDSENKESTAGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGGMLPIFCMDIMQSFGFLLHANPLMRTDTYYGEILYATTTFICYVDIFILAGVTVFLQEGKERSTVQDEVQFYATADERIVEIQGETLKVLKALEAVVGHLRKFLVDHSVLPLFERNFNAPISQDRQAEAWSDKSLLNSTSRTSVFPDMPLPTKRDSILAERESQLDSLLPSSTMSLYGQDSSLSGVRSSALGRVSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAVLTVQESRVPDEIIVEIKGTSSEVQTAQQLIQDFISTHKEPVSMNYGRLDAGSRSSYSQLGTASRLPSSLSSQPYTGYGSSGLGDYSTFRL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00270 507 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 291 IPR036612 GO:0003723
Vian4g00270 507 Gene3D K Homology domain, type 1 145 286 IPR036612 GO:0003723
Vian4g00270 507 ProSiteProfiles Type-1 KH domain profile. 144 180 - -
Vian4g00270 507 Pfam KH domain 147 181 IPR004088 GO:0003723
Vian4g00270 507 Pfam KH domain 54 111 IPR004088 GO:0003723
Vian4g00270 507 Pfam KH domain 387 449 IPR004088 GO:0003723
Vian4g00270 507 ProSiteProfiles Type-1 KH domain profile. 384 447 - -
Vian4g00270 507 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 39 469 - -
Vian4g00270 507 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 123 IPR036612 GO:0003723
Vian4g00270 507 Gene3D K Homology domain, type 1 51 122 IPR036612 GO:0003723
Vian4g00270 507 Gene3D K Homology domain, type 1 382 456 IPR036612 GO:0003723
Vian4g00270 507 MobiDBLite consensus disorder prediction 1 43 - -
Vian4g00270 507 CDD KH-I_PEPPER_rpt1_like 51 119 - -
Vian4g00270 507 MobiDBLite consensus disorder prediction 1 18 - -
Vian4g00270 507 SMART kh_6 50 123 IPR004087 GO:0003676
Vian4g00270 507 SMART kh_6 383 452 IPR004087 GO:0003676
Vian4g00270 507 SMART kh_6 143 284 IPR004087 GO:0003676
Vian4g00270 507 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Vian4g00270 507 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 380 453 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00270 Vian-Chr4 2864994 2871664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00270 K21444 - gmx:100815466 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00270 4 2864994 2871664 Vian4g00270 4 2864994 2871664 ECH
Vian1g00602 1 5839612 5845174 Vian4g00270 4 2864994 2871664 PCT