Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00602 ATGGCCACCCTCGACCCAATCCAAAACGGCACAGCCAATCCCCTACTATCGGACAATCCCGACCCCGCCGAACCTCCCTCCACCACCGCCGACGATCCCACTTCCGAGGTCGCGACCGAGAAGCGGTGGCCGGGATGGCCCGGCCTCTGCGTGTTCCGGCTCATCGTTCCGGTCCTCAAAGTCGGAAGCATCATTGGCCGCAAGGGGGAGCTCATCAAGAAGACTTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCGGTTGGCACGCCCGATCGAATCGTACTCATATCAGGGAAAGAAGAGCCAGAGACACCACTTTCTCCTGCAATGGATGCTGTCATAAGGATTTTTAAACGTATCTCCGGGTTGTCTGAAATTGATGGCGAAAACAAAGCAGCAGGGCTTGCGTTTTGTTCTGTTCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAACAGGGTTCATTAATTAAATCTATACAAGAAAATACCAGTGCATCTGTTAGAGTACTATCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGCTGCAGGGAGAAGCCATGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGACCCCAGTGTTCTTCCTTTATTTGAGAAAAGTTACAATGCAACAATCTCCCAAGAGCGCCAAGTAGATACTACTTGGGTTGACAAACCATCACTGCATAGTGCTTCACAGCCTAGCATTGCAAATGACATTCCTCTTTCATCAAAAAGGGATTCTCTGTATGCTGACCGTGAAAGCCATTTGGATTCATTGCTCCCTCCTTCCACAATGTCAGTATATGGTCAAGATTCTTCACTTTCTAGTCTTCGGTCTTCAGCCCTCGGTCGTTCCAGTGCTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTACGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGCCGCACCAGTGGAGCTATATTGACCGTGCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACAGCACAGCAATTGATTCAGGAAGTTATAAGTAATCACAGAGAACCTGTGGCTAGTAATTACAGCAGCAGGTTAGATACAGGTCTGAGGTCTTCTTACCCTCAGCTGGGCAGTTCGTCTTATTCGTCATCTTCCTTGTCGCAACCCTACAGCAGTTATGGATCTTCTGGTCTAGGAGGAGGCTATAGTACTTTCAGACTTTGA 1323 0.4837 MATLDPIQNGTANPLLSDNPDPAEPPSTTADDPTSEVATEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPETPLSPAMDAVIRIFKRISGLSEIDGENKAAGLAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDPSVLPLFEKSYNATISQERQVDTTWVDKPSLHSASQPSIANDIPLSSKRDSLYADRESHLDSLLPPSTMSVYGQDSSLSSLRSSALGRSSAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHREPVASNYSSRLDTGLRSSYPQLGSSSYSSSSLSQPYSSYGSSGLGGGYSTFRL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00602 440 Gene3D - 50 216 - -
Vian1g00602 440 MobiDBLite consensus disorder prediction 1 34 - -
Vian1g00602 440 MobiDBLite consensus disorder prediction 1 41 - -
Vian1g00602 440 Pfam KH domain 319 381 IPR004088 GO:0003723
Vian1g00602 440 Pfam KH domain 143 209 IPR004088 GO:0003723
Vian1g00602 440 Pfam KH domain 52 104 IPR004088 GO:0003723
Vian1g00602 440 CDD KH-I_PEPPER_rpt2_like 142 214 - -
Vian1g00602 440 ProSiteProfiles Type-1 KH domain profile. 140 209 - -
Vian1g00602 440 Gene3D K Homology domain, type 1 311 390 IPR036612 GO:0003723
Vian1g00602 440 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Vian1g00602 440 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Vian1g00602 440 CDD KH-I_PEPPER_rpt1_like 50 117 - -
Vian1g00602 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 219 IPR036612 GO:0003723
Vian1g00602 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 104 IPR036612 GO:0003723
Vian1g00602 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 311 385 IPR036612 GO:0003723
Vian1g00602 440 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 39 410 - -
Vian1g00602 440 SMART kh_6 315 384 IPR004087 GO:0003676
Vian1g00602 440 SMART kh_6 139 214 IPR004087 GO:0003676
Vian1g00602 440 SMART kh_6 48 121 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00602 Vian-Chr1 5839612 5845174 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00602 K21444 - gmx:100802089 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00602 1 5839612 5845174 Vian1g00602 1 5839612 5845174 ECH
Vian1g00602 1 5839612 5845174 Vian4g00270 4 2864994 2871664 PCT