Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00265 ATGGGTTCTCGAAATTCTCAACCCAACGTCTCAGAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGATTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAAGCTACCAATCACGTGGAATACCCTCCCAAGGAGCGTCATGTTGCTATAAAGGCATTAATAGTCATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTTAGAGAAGAGATCCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGTCCTCAAGCATGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTGGAAGAAAGACTTGAATGCTTTAGGGTGCTCAAATATGATATAGAATCAGAACGTTTGACAAAAGCATCACCAACTGCAACTAAAGCACACAGTAGAACTCGATCACTGAATAGTGAGGAGCTGTTGGGGCAGTTACCTGCACTGCAACAACTCCTATATCGTCTTATTGCTTGTCAGCCTGAAGGATGCTCTTATAGCAACTACCTAGTGCAGTATGCATTGGCCCTGGCTGAGAATCTTGCTGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCCAGGAATTTCCAGTTTCCAACACTGAGACAGGAATATGAAGAAAATGATGAATCATCTAAAGAAGATTCAGAATCCGATGAAACTGAAGAGCCTGAAGAAAATGAAGAACACTATGAGGAATTCAACGAGGAAGATTCGGTAGCAGGGGATGAAGCACAATCTAAGGAGGAGGTGGAGGTGGAGGTTGAGCCTCCTCCTTTGATATCAACCGATGATGGTGCAAATGATTTGTTGGGACTTAATGAAATAAATCTAAAAGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTGTACCACCTGGTGGAAGTAACCCAAACAATCTTACTTTGAGTACCATTGATGGAACTACTGGTTGGGAACTTTCATTAGTTACAGCACAAAGTAAACATACTGGTCAAGCCACAGATCGCAAAATGGCCGGTGGTTTTGATACACTGTTATTGGACAGTCTGTATGAAGATGAAAATGCCAGAAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGAGGAACCGCCATGGATGTACAGAACCCTTTTGATCATTATAACCAACAAGATCCTTTTGTAATGTCCAACAACATAGCACCTCCAACCAATGTGCAATTGGCACTAATGGCTCAACAGCAACAACAGCAGCAGATGATGTTCCAACATCCACAAATGTTGTACCAACAACCACAACAACACAACATGATGATGATTCCTCACCAGCAGCAACCACAAAACCAATACTCTCAACAGATGCACAATCCAGATTCTCATAATCCATTTGGAGATCCTTTGCCATTACCAAACTATAATCAGAATTACATGCCCCAACAAGGAAATTACAATTTAATGTAG 1494 0.4163 MGSRNSQPNVSESFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVAIKALIVIHRTLREGDPTFREEILNYSRRGHILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKASPTATKAHSRTRSLNSEELLGQLPALQQLLYRLIACQPEGCSYSNYLVQYALALAENLADFYEYCKGLELARNFQFPTLRQEYEENDESSKEDSESDETEEPEENEEHYEEFNEEDSVAGDEAQSKEEVEVEVEPPPLISTDDGANDLLGLNEINLKAMELEENNAMALAIVPPGGSNPNNLTLSTIDGTTGWELSLVTAQSKHTGQATDRKMAGGFDTLLLDSLYEDENARRQLQLQNAGYGHGGTAMDVQNPFDHYNQQDPFVMSNNIAPPTNVQLALMAQQQQQQQMMFQHPQMLYQQPQQHNMMMIPHQQQPQNQYSQQMHNPDSHNPFGDPLPLPNYNQNYMPQQGNYNLM 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00265 497 PANTHER CLATHRIN ASSEMBLY PROTEIN 196 432 IPR045192 GO:0048268|GO:0072583
Vian4g00265 497 SUPERFAMILY GAT-like domain 147 222 - -
Vian4g00265 497 MobiDBLite consensus disorder prediction 459 482 - -
Vian4g00265 497 Gene3D ANTH domain 145 196 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vian4g00265 497 Pfam ANTH domain 59 195 IPR011417 GO:0005543
Vian4g00265 497 Gene3D - 60 133 IPR008942 -
Vian4g00265 497 Gene3D - 12 59 IPR008942 -
Vian4g00265 497 SMART enth_2 37 133 IPR013809 -
Vian4g00265 497 MobiDBLite consensus disorder prediction 260 274 - -
Vian4g00265 497 MobiDBLite consensus disorder prediction 223 286 - -
Vian4g00265 497 SUPERFAMILY ENTH/VHS domain 38 133 IPR008942 -
Vian4g00265 497 MobiDBLite consensus disorder prediction 229 259 - -
Vian4g00265 497 CDD ANTH_N 39 126 - -
Vian4g00265 497 ProSiteProfiles ENTH domain profile. 1 133 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00265 Vian-Chr4 2829251 2834587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00265 K20044 - gmx:100786060 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00265 4 2829251 2834587 Vian4g00265 4 2829251 2834587 ECH
Vian1g00606 1 5887212 5892553 Vian4g00265 4 2829251 2834587 PCT