Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00606 ATGGGAACGTTCCGTACCTTAAGAAAGGCCTACGGTGCTCTCAAAGACTCTACCAAGGTTGGCCTAGCCAAGGTCCATAGCGAATACAAGGATTTGGATGTTGCTATTGTGAAGGCTACCAGTCATGTAGAATATCCTCCAAAGGAACGTCATGTTGCTGTAAAGACATTGATAGTCATTCATAGAATATTAAGAGAGGGTGATCCTACTTTCAAAGAAGACCTCATAAACTATGCGCGTAGGGGACGTTTTCTTCAAATATCCAATTTCAAAGATGACTCAAGTCCTCAAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGGCTTGAATGTTTTAGAATCCTTAAATATGACATCGAGGCTGAGCGTTTATCAAAACCATCACCCGTTATAACTAAGGGACATAGCAGAACACGGTCGTTGACTAAAGAAGGGCTATTGGAGCAGCTGCCTGCACTGCAGCAACTTCTATACCGCCTAGTTGGTTGTCAGCCTGAAGGTTTGGCTGTCAGCAGTTACCTAATACAATATGCACTGGCCTTGTTCTTTGATATGCCAAAGTATGATGCAATCAAGGCGTTACACGTTTATAAAAGGGCTAGCCAACAGGCTGATCATCTTGCCGAGTTCTATGAATACTGCAAGAGATTGGACCTTGCTAGGAATTTTCAATTTCCAATCTTGAGACAGCCACCTGCTTCTTTTCTTGCCACGATGGAAGAATACGTTAAAGAAGCACCCTTGAATGCATCTAATAGACTGGAGTATCACGAAAATGGTCAATCACCTAAAAAGGAAGCAGAACCTAAAGAATCTGAAGAGACTCAAGCAACCGAAAAACCCGATGAAGAAAACAAAGAGGAGGAACAGGTGCATGAGGACGAACCAGAGCCTAAGGAGGAGGAAGTGGAACTTCCTCCTTTGATATCAACTGATTCTACTGATGATTTGCTGGGTCTAAACGAAATAAATCCAAAAGCCCGGGAACTAGAAGAAAGCAATGCTTTGGCGCTAGCAATTGTACCAGCCGGAGGAAATAACTCAAGCAGTCTTGATTTGGCTTACACAAATGGAACTTCTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCATACAAGCCAAGCGCCAGATCGAAAAATGGCTGGTGGGTTTGACAAGCTATTACTAGACAGTTTGTATGAAGATGAAAAGGCTAGGAGACAACTTCAACTCCGAAATGCAGGCTATGGATATGGGGAAATGGATACACGTAACCCATTCAATCATCATAATCAGCAAGATCCATTTGCGGTGTCCAACAACATAGCACCTCCAACCAATGTGCAAATGGCATTCATGGCTCAGCGACAGCAACAACAACTGATGTTCCAGCAACATCAACAACATAATAGGATGATGGGCCATTACCAGTATCCACAGACTCAATACCATCAACAAATGCCAGTCATGGGTTCTTCTAATCCATTTGAGGACCCCTTACCCGTGCCCACCCATGCTTATAATTCCATGAATCATCAAGGGAACTACAATTTAATATAG 1566 0.4298 MGTFRTLRKAYGALKDSTKVGLAKVHSEYKDLDVAIVKATSHVEYPPKERHVAVKTLIVIHRILREGDPTFKEDLINYARRGRFLQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRILKYDIEAERLSKPSPVITKGHSRTRSLTKEGLLEQLPALQQLLYRLVGCQPEGLAVSSYLIQYALALFFDMPKYDAIKALHVYKRASQQADHLAEFYEYCKRLDLARNFQFPILRQPPASFLATMEEYVKEAPLNASNRLEYHENGQSPKKEAEPKESEETQATEKPDEENKEEEQVHEDEPEPKEEEVELPPLISTDSTDDLLGLNEINPKARELEESNALALAIVPAGGNNSSSLDLAYTNGTSGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDEKARRQLQLRNAGYGYGEMDTRNPFNHHNQQDPFAVSNNIAPPTNVQMAFMAQRQQQQLMFQQHQQHNRMMGHYQYPQTQYHQQMPVMGSSNPFEDPLPVPTHAYNSMNHQGNYNLI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00606 521 Gene3D - 53 126 IPR008942 -
Vian1g00606 521 Gene3D - 6 52 IPR008942 -
Vian1g00606 521 SMART enth_2 30 126 IPR013809 -
Vian1g00606 521 MobiDBLite consensus disorder prediction 265 294 - -
Vian1g00606 521 SUPERFAMILY ENTH/VHS domain 31 126 IPR008942 -
Vian1g00606 521 ProSiteProfiles ENTH domain profile. 1 126 IPR013809 -
Vian1g00606 521 Pfam ANTH domain 52 188 IPR011417 GO:0005543
Vian1g00606 521 Pfam ANTH domain 189 251 IPR011417 GO:0005543
Vian1g00606 521 CDD ANTH_N 32 119 - -
Vian1g00606 521 Gene3D ANTH domain 139 187 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vian1g00606 521 MobiDBLite consensus disorder prediction 257 326 - -
Vian1g00606 521 Gene3D ANTH domain 188 254 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vian1g00606 521 SUPERFAMILY GAT-like domain 143 252 - -
Vian1g00606 521 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 52 IPR045192 GO:0048268|GO:0072583
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00606 Vian-Chr1 5887212 5892553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00606 K20044 - vum:124839571 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00606 1 5887212 5892553 Vian1g00606 1 5887212 5892553 ECH
Vian1g00606 1 5887212 5892553 Vian4g00265 4 2829251 2834587 PCT