LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g00262	ATGCCACCGGCGCTGTTTGATCCGTTGTCAGCGATTACGGCCACCTCCGCGGACGCCGTTTTGAAGTCATCGGCACCTGACAATCGGCGATTCCGGGATCTTAGAGGGCTGCAGTGGCGGATAAATCTTGGCGTGTTGCCGTGTTCAACTTCGACTTCAATTGAAGATTTTCGTCGAGTCACGGCCAATTGTAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTTCTGGTTGAACCACATGTTCCAAAGAATGGAAGTAATTCACCCAATCTTGACATTGACAATCCACTTTCACTAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGACTATACCCAGAACATGGTAGTTATTTTCAAGCACCAGGATGCCAAAGCATGTTGAGGCGAATTTTGTTGCTGTGGTGTCTCAGGCATCCAGAATGTGGATATAGACAAGGAATGCATGAGTTACTTGCTCCTCTGCTTTATGTACTGCAATCTGATTTGGAGCGTCTCTCAGAAGTTCGGAAGCTTTATGAAGATCACTTTACAGATAGATTTGATGACCTTTTAGGTCAAGAGAATGATATTTCTTACAGCTTTGAATTTAGAAAGTCTCGAGAATTGATGGACGATGGATTTGATTCCCATGGAAATTCCATTAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCATACTGTATGTTTGAGGCTTTAATGAACGGGACTCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCCTCACCTATATCCGGGTCCCATAGTGGCCTTCCTCCTGTGATTGAAGCTTCTAGGGCACTGTATTATTTGTTGTCTCAGGTAGATTCATCTCTTCATAGCCATCTTTTTGATCTTGGAGTTGAACCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGTCGGGAATTTTCACTTGGCAATCTTTTGATCATCTGGGATGAGATATTTGCATCCGAGAATAACAGCAATGGAAAAGGTTCTGATGACTGTGAGTTCAGAATCTTAAGTTCACCCCGTGGAGCATTTATCTCAGCCATGGCAGTAGCAATGTTACTGCATTTAAGATCTTCACTGCTTGCAACTGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATCCAAAAACTACTAGAGAAGGCCAGATCCTTGCAGGCTCTTGCTCTAAGTGTTGATATTTCAACCTCGTCACTTTTGTATATCGGGTTCCATTACCAAAGTAAATCGAAGTATAGTAGATCTGTGACCCTTCCATCTGAATCTCTGTCTCCGAAAGCTCCCCTGAGTTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCAGAAGGCTGAAGAACAAAGGCAAGATGGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACGGAAAAAGTGAAATTCAGTTTGAGAAGAGCAGAATCTGACCCTCCTAGGTCAAGATTTCAGAGTGGCAAAAATATTAGGCGCAATTTGTTGCAAGATCTGCGCAAGGCACTTGGCTCAGATGATGATGCAGAGAAAATGCAGCCAGATGAAACCATATGCCAGAATGAGAATCCTTCTGATGCAATTCAAGTACAAGAAGACGGTAGCTTCAATGGTGACAACAATTATTCATCTGATGATAGATCTCCAGGTGCACCTTTTGGCAGTGAGGAAGACTTGTCTATATATTCTGACCCAACTAGCCCCCCCAATGAGGCCAATGATGATGAAATAATCTCAGGGAAAATTAGTGTTGCATCTAATTCATCCCTGGACGAACGCAATGAAACATCAGGCATTAGTTCGCCATTGCCAATGCCCTATCGTCCTCAGGACATTTATCAGACATCGTTCTGCAATACAGGAAATTCTGAATGCAATGAAACTTCAGATACCAGTCCCAATGATCAACCCCGTCCAATCTCTGATCTTCCTGAGAACATTTCTCAGACATTAATCAGCAATACACGAAATTCTGAGCGCAATGATTCACCCCTTCCCATCTCTTATTCTCCTGACAACATTTATCAGACATCATTCTGGAATACAGGAAATTCTGAATGCAATGAAACTTTAAATACCAGTCCCAATGATCCACCCCTAAAGTCAGGGTGCAATAACAATAATGCTGAAAATAAAGCCACACCTCCTAAAGAGAAAAAGCATAATAAGTTCCAGTGGCTTTGGCCCTTTGGACGGAATACTGTTGAGGCTATATCTGAGAAAGCTGGTGGTAGCTCTCAAAATAGTGCTCCACAAGCCACCTCATCCACAACCAATGACCATGGTGGTTCTGTTAGCTCCAGAGGAGAATCGGTAGACCAGAATGTTATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGCCAGGTCACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTAG	2640	0.4284	MPPALFDPLSAITATSADAVLKSSAPDNRRFRDLRGLQWRINLGVLPCSTSTSIEDFRRVTANCRRRYASLRRRLLVEPHVPKNGSNSPNLDIDNPLSLNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQAPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQSDLERLSEVRKLYEDHFTDRFDDLLGQENDISYSFEFRKSRELMDDGFDSHGNSIKVNSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFEALMNGTHGSVAMADFFSSSPISGSHSGLPPVIEASRALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLGNLLIIWDEIFASENNSNGKGSDDCEFRILSSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIQKLLEKARSLQALALSVDISTSSLLYIGFHYQSKSKYSRSVTLPSESLSPKAPLSLVPDSYWEEKWRVAQKAEEQRQDGLEKQVPTRKKGWTEKVKFSLRRAESDPPRSRFQSGKNIRRNLLQDLRKALGSDDDAEKMQPDETICQNENPSDAIQVQEDGSFNGDNNYSSDDRSPGAPFGSEEDLSIYSDPTSPPNEANDDEIISGKISVASNSSLDERNETSGISSPLPMPYRPQDIYQTSFCNTGNSECNETSDTSPNDQPRPISDLPENISQTLISNTRNSERNDSPLPISYSPDNIYQTSFWNTGNSECNETLNTSPNDPPLKSGCNNNNAENKATPPKEKKHNKFQWLWPFGRNTVEAISEKAGGSSQNSAPQATSSTTNDHGGSVSSRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNLLSEM	879

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	794	828	-	-
	Vian4g00262	879	Gene3D	-	306	445	-	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	570	602	-	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	634	657	-	-
	Vian4g00262	879	FunFam	TBC1 domain family member 5	306	447	-	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	740	777	-	-
	Vian4g00262	879	Pfam	Rab-GTPase-TBC domain	265	367	IPR000195	-
	Vian4g00262	879	Pfam	Rab-GTPase-TBC domain	115	178	IPR000195	-
	Vian4g00262	879	SMART	tbc_4	26	410	IPR000195	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	526	545	-	-
	Vian4g00262	879	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	33	327	IPR035969	-
	Vian4g00262	879	ProSiteProfiles	TBC/rab GAP domain profile.	29	367	IPR000195	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	558	698	-	-
	Vian4g00262	879	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	103	284	-	-
	Vian4g00262	879	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	302	439	IPR035969	-
	Vian4g00262	879	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	32	435	-	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	740	766	-	-
	Vian4g00262	879	MobiDBLite	consensus disorder prediction	666	698	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g00262	Vian-Chr4	2804966	2809286	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g00262	K18469		-	gmx:100782008	1360.51

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g00262	4	2804966	2809286	Vian4g00262	4	2804966	2809286	ECH
	Vian1g00608	1	5899413	5904758	Vian4g00262	4	2804966	2809286	PCT