Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00608 ATGCCGCCGGCTGTGATGGATCCACCATTGCCGGAATCATCGTCGGTGCTGTCTTTTTCCTCCGACATCGTTTTTCCGGGAACGGAGCCGGATAATCGGCGATTCGGGAATCTTAGAGGTCTACAGTGGCGTATAAATCTTGGGGTATTGCCATCTTCTTCCATTGATGATCTTCGTCGAGCCACTGCTAATTCTAGAAGGAGGTATGCCAGTTTGAGAGGGCGCCTTTTGGTTGATCCTCATGTTGTAAAGGATGAAAGTAGTTTGCCCAATCTTGTCATGGATAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAAATAGAGAGGATGATTGATCAGGATTTGTCTCGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCACAGACACCCAGAGTGTGGTTACAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTACTCCAATATGATGTGGAGTGTCTTTTAGAAGTTCGAAAGCTTTATGAAGATCACTTCACTGACAGATTTGATGACCTCCTTTGTCAAGAAAATGATCTTTCTTATAACTTTGATTTTAGAAAATCTTCTGACTCGATGGAGGATGGAATTGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGACCCCAAGATACAGAACATTGTGTTGCTAAGTGACGCTTATGGGGCAGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATCGAACATGATGCTTATTGTATGTTTGATGCTTTGATGAATGGGGCTCGTGGTTCAATTTCAATGATCGATTTCTTCTCCTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATGCCCATCTTGTTGATCTCGGGGTTGAACCTCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCAGCAACCTTCTAATAATCTGGGATGAAATCTTTTTATCAGATAATAGTAAAGTGGAAAAACATGTCGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTTTCGTGGAGCATTTATCTCTGCTATGGCAGTAGCAATGATGCTTCATTTAAGATCTTCACTTCTTGCTGCAGAAAATCCTACAACCTGTCTTCAGAGATTATTAAACTTCCCTGAGAACACGGATATTGAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTCATCGTCAATGCCTTCATTCGTAGAGTATCATAACCAGGCCAAACCAGTTATTGCAAGATCTCACACCCTTTCATCTGAATCAATCTCTCCGAAAACTCCTGTGAATTCGGTACCTGAGAGCTACTGGGAAAAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGGGTGGAAAAACAGGTTCCATCTCGGAAGAAGGGATGGACAGAAAAGGTGAAGTTCAGTTTGAGAAGAACAGAATCTGACCCCTCTTCACCAAGGTCTAGGAGTGGTAAAAAGGAATCCAAGTCACCAGTTAGACGCAATTTGTTAGAAGATCTATCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAAACTCAACAGTCATGATAATCTACCTGTAACAGTTGAAGCGGAGCAACGGGAAGACGGTTCGGCATGCAGCAACTGTTGTTCTCCTGCAGATAGATGTCTAAGTCAAAACACAAGTAGTGTGGAAAACTCACCTGCTATGTCTTGCTCAGCTAGCCCTCGTAACGAGGCTAATGATCTCAAAAATGACTGTGAGAAGAGTAGTGTTGGATCTAATTTATCCCTTGATGGAACTAGTGAAGCCTCACTTAGTAGTCCCTTTGATTCACGTCTTCCAATCCCTGATCATCCTGAGAACGTATCAAACACAACAGGAAGAGATAATAATATTTCTGCTGGAAATTCAACCGCCCATTCCAAGGAGAGAAAATTGAACAAATTTCAGTGGCTATGGAAGCTTGGACGGAATAATGGTGAGTTTACTTTAGAGAAAGGAAGTGATGCTTCTGAGGCAGTAAAACCTGCCAACAGTTGTGATGATCAAAGCAATACAGTACCCTCTTCTACAGCCAATACGCATTGTAGTCCTCTCGGTTACAAAGGGGAATCTACAGAGCAGAATATGACGGACACTATGAGGAATATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATAGAGAAAGCTTTCCAACAGTGGGGAGAGGGAGCACCATTGGATAACATGTCTGAAAATGTTGTGTTGGGTGAAGAGCAGGTTACTCCCATGTCAGCTCTGAAGGAGCTACGTAAAATCAGCAATCTTTTGTCTGAGATATGA 2478 0.4249 MPPAVMDPPLPESSSVLSFSSDIVFPGTEPDNRRFGNLRGLQWRINLGVLPSSSIDDLRRATANSRRRYASLRGRLLVDPHVVKDESSLPNLVMDNPLSQNPDSTWSRFFRNAEIERMIDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCHRHPECGYRQGMHELLAPVLYVLQYDVECLLEVRKLYEDHFTDRFDDLLCQENDLSYNFDFRKSSDSMEDGIDSNGNAMKIKSLDELDPKIQNIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGARGSISMIDFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHAHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVEKHVEDNADSGFRIFNSFRGAFISAMAVAMMLHLRSSLLAAENPTTCLQRLLNFPENTDIEKLIEKAKSLQALALSTEISSSMPSFVEYHNQAKPVIARSHTLSSESISPKTPVNSVPESYWEKKWRVVHKAEELKQDGVEKQVPSRKKGWTEKVKFSLRRTESDPSSPRSRSGKKESKSPVRRNLLEDLSKELGFEEDTEKLNSHDNLPVTVEAEQREDGSACSNCCSPADRCLSQNTSSVENSPAMSCSASPRNEANDLKNDCEKSSVGSNLSLDGTSEASLSSPFDSRLPIPDHPENVSNTTGRDNNISAGNSTAHSKERKLNKFQWLWKLGRNNGEFTLEKGSDASEAVKPANSCDDQSNTVPSSTANTHCSPLGYKGESTEQNMTDTMRNIGQSMLEHIQVIEKAFQQWGEGAPLDNMSENVVLGEEQVTPMSALKELRKISNLLSEI 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00608 825 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Vian1g00608 825 Gene3D - 307 451 - -
Vian1g00608 825 MobiDBLite consensus disorder prediction 607 630 - -
Vian1g00608 825 MobiDBLite consensus disorder prediction 510 557 - -
Vian1g00608 825 Pfam Rab-GTPase-TBC domain 268 369 IPR000195 -
Vian1g00608 825 Pfam Rab-GTPase-TBC domain 114 188 IPR000195 -
Vian1g00608 825 MobiDBLite consensus disorder prediction 637 659 - -
Vian1g00608 825 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Vian1g00608 825 MobiDBLite consensus disorder prediction 607 692 - -
Vian1g00608 825 MobiDBLite consensus disorder prediction 720 757 - -
Vian1g00608 825 FunFam TBC1 domain family member 5 307 451 - -
Vian1g00608 825 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 443 IPR035969 -
Vian1g00608 825 MobiDBLite consensus disorder prediction 728 757 - -
Vian1g00608 825 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
Vian1g00608 825 SMART tbc_4 30 414 IPR000195 -
Vian1g00608 825 MobiDBLite consensus disorder prediction 669 691 - -
Vian1g00608 825 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00608 Vian-Chr1 5899413 5904758 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00608 K18469 - gmx:100816501 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00608 1 5899413 5904758 Vian1g00608 1 5899413 5904758 ECH
Vian1g00608 1 5899413 5904758 Vian4g00262 4 2804966 2809286 PCT