Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00260 ATGAAAGAGGAAAAAGAGAGGAAAATTGTACTCACAAAGCCATTAACGATAGACAGTGAATCTAATTCAGACGCGTATAAAGCCCCTAATCTTTTGCAACGAATGCTCAGTTTATTCAAGAATGTACGCCCCGGTTCTGACCTCACACGCTTTCAGCTGCCTCCACTATTCAACTTACCGAAGTCACAACTTCAGTGCTATGGTGAATCAGTGTATTGCACAGGTTCAGACTTGCTAAGCATGTGCAACAATGGAGAGAGTCCAATTGACAGGTTCATATCTGTTGTAGCATGGACCATATCTACCACTCGCCCTGTGACTTTTGGGGTTGCGCCTTATAATCCAATTCTTGGTGAGACACACCATGTTTCAAAGGGAAATCTTAATGTGTTATTGGAGCAGATTTCACATCACCCTCCAGTAGCTGCTCTCCATGCAACTGATGAGAAGGAAAACATTGAAATGATATGGTGCCAGCGACCTGATCCAAAGTTTAATGGCACATCAGTTGAAGCTAAAGTGCATGGTATTCGGCAGCTGAAGCTACTCAATCATGGTGAAACATATGAAATGAATTGCCCTCACCTTTTACTTAGAATTTTTCCAGTTACTTCGGCTGATTGGTCTGGCACAGTTACCATCCGGTGCCAAGAGACAGGCATAGTGGCTGAGTTATCCTACAGATCAAGTAGTTCCTTTCTAGGAATTGGAGGGAATCATAGAGTGATCAAAGGAAAGATCCTTGACTCTTCATCATTAAAAGTTTTGTATGAAGTTGATGGTCATTGGGATAGGGTTGTAAAATTGAAGGATACAAATAATAAGGAAGTAAGAGTAATATATGATGCAAAGGAATTTCTGTCAGGTCTAGAAACTCCAAAACTCAAGGATTCGGAGAGTGTGTGGCCAACTGAGTCAGCTCATGTTTGGGGAGAACTGAGTGAAGCCATATTGAGGAAGGACTGGGAGAAAGCAAGAGAAGCAAAGCTAGAAATTGAGGAAAGACAAAGGAAGCTCTTGAAAGAAAGAGAGTCAAAAGGAGAAACATGGGTTTCTAAGCATTTTGTAGTATCTAACAACAAAGAAGGGTGGGAATGTTCACCTATTCAAAACACTGTACCTGCTGCCCCCATCACAGCACAATAA 1146 0.4171 MKEEKERKIVLTKPLTIDSESNSDAYKAPNLLQRMLSLFKNVRPGSDLTRFQLPPLFNLPKSQLQCYGESVYCTGSDLLSMCNNGESPIDRFISVVAWTISTTRPVTFGVAPYNPILGETHHVSKGNLNVLLEQISHHPPVAALHATDEKENIEMIWCQRPDPKFNGTSVEAKVHGIRQLKLLNHGETYEMNCPHLLLRIFPVTSADWSGTVTIRCQETGIVAELSYRSSSSFLGIGGNHRVIKGKILDSSSLKVLYEVDGHWDRVVKLKDTNNKEVRVIYDAKEFLSGLETPKLKDSESVWPTESAHVWGELSEAILRKDWEKAREAKLEIEERQRKLLKERESKGETWVSKHFVVSNNKEGWECSPIQNTVPAAPITAQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00260 381 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 35 365 IPR000648 GO:0008289
Vian4g00260 381 FunFam Oxysterol-binding protein-related protein 4C 116 294 - -
Vian4g00260 381 ProSitePatterns Oxysterol-binding protein family signature. 133 143 IPR018494 -
Vian4g00260 381 Pfam Oxysterol-binding protein 38 365 IPR000648 GO:0008289
Vian4g00260 381 Gene3D - 117 291 - -
Vian4g00260 381 Gene3D - 302 376 - -
Vian4g00260 381 Coils Coil 325 345 - -
Vian4g00260 381 SUPERFAMILY Oxysterol-binding protein-like 34 367 IPR037239 -
Vian4g00260 381 FunFam Oxysterol-binding protein-related protein 4B 302 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00260 Vian-Chr4 2757237 2760915 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00260 K22285 - gmx:100813724 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00260 4 2757237 2760915 Vian4g00260 4 2757237 2760915 ECH
Vian1g00610 1 5929038 5933145 Vian4g00260 4 2757237 2760915 PCT