Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00249 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGGGTAAATGGCCCTCACATAAGGAAGCTACAGCTTTCGGTTCAACATCTCGCAACATGGCGACAGAGGATTTGGGTATACTTTTGAATGGCCATAGGTTCCATGGTGGGAGAAAGGAGCTGACACCAAATCGAAGTGGCAGTGCACCTCCCAGCATAGAAGGCTCGTTTTTGGCCATAGAAAACCTCTTACCCCAGCAGATCATCACCCAGAATGCAAGCTTTGCAGCTCTAAGCAGTGTTGTGCAAAATTGTGAGTCTGAAGACCAATTGCGAGCAGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAACCGCCATCTAGGACGTCATATTGGCAGTTTTAGAAATAACTGGAGAATGTCTGCTGCTGATGATAGTGATAAAAGTTCCTTACATTTGCCTCAAAGGACACTTTCCACACACAAGGAGGAGTTGGAAGATGAATCACACCAACAGCCATATGATGATGAATTGATTAAGGTGAGCGGATTGTGGCGTAGACCTGATGCGGCTTCATTGGTATCTCAACCTAAAAACGTTGTTGATTTAATTCAGGAGGATTTTCCTCGTACCATGTCACCTGTATATAATAAGTCTCTTTCTGAAAGTCCTGGACTAGTGGATAAACCAATTGACTTAGAAGTCGGTTCTAGTTCTTCTCATGATCCCCCTGTTACTACAGTAGAAGCTGCTAAAACTACTGTAGGTGCGGATAGTATAAGGGTGTCATCAATTGTTGATACCCATGCCCCAGTTACAAGCTCTTCATCTCTTGAATCGACTGGTAGCATTGGTGTTAATGACTTAGATGTTGCCTCTCAATTAAAGGCTCTTGGTGTATCTAATCTACCACGCTCAGAAAGTCTGAGTTACGAAGAAAAGTGGAAGACTAGCTACCAGATGCAACACGCAGGATTCCAGCAACAAAACAATGCATCTGATATTAGCGCCAATTCTCAAAATGTAAATTCTGTGTATATTGGTAGGGAACAGTTTCCTTTTAATTCAAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCGTCTGGGTTTACACCTCCCCTATACGCCACAGCAGCTGCTTATATGAACTCAGCAAATCCATTTTACACAAATATGCAGACCCCGGGTATGTATACTCCACAATATGTTGGTGGATACACTGTAAATCCGACAGCTTTTCCTCCATATGTTACTGCATACCCTCCTCATGGTGCTGTACCGTTTGTTGTTGATGGAGCTACTAGTTCTAGTTATAATCCACTAACGCCTGGGGTTTCAACTGGGGGAAACATTTCACATGGAACTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCCATGTACATGCAATATCAGCAGCAGCCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTAGTGTTAACCAAATTAACCCTTATGATTCACAAAAAAGGCCCAGTACTGGTACTTATTTGGATGATAAAAAATTACCTGATCAAAGATCTGCTACTAATATGAACTCAAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGATTTTTAATGCAGTATCCAAGTTCACCACTTCCAAGCCCAGTTTTATCTGGATACCCAGAAGGAAGTCCAGGCCATCTAGGTGGTAATAATGAAATAAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATAATGTCTGGATGGCAAGGTCAGAGATCATTTGATGGTGGTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGAAGTCGATTTATACAGCAGAAGTTGGAAAATTGTAGTATTGAAGAGAAGACATTGGTGTTTAAGGAGGTTCTCCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAACAGAGGAGGGAACTTGCAGATCGACTGGTTGGCCAGATACTGCCTCTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAACGGTAACCATGTAATTCAAAAGTGCATCGAATCAATTCCAACCAAAAAAATTAATTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTTTATCGATGCATCCCTATGGATGTCGAGTAATACAGAGAGTACTAGAACATTGCACGGATGAGAGTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTGATCTTGCTCAGGACCAGTATGGCAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATATTGTTGAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGATGCTAATTGCAGAGATATTTGGGCATGGTGAACAAAGTGATAATTTATTGATAATGATGAAAGATCAATTTGCTAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAAACAGCAAGCAATGTTACTTGCTCATGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGGAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCTGGCTCATGA 2937 0.412 MATESPIRISEAGGKWPSHKEATAFGSTSRNMATEDLGILLNGHRFHGGRKELTPNRSGSAPPSIEGSFLAIENLLPQQIITQNASFAALSSVVQNCESEDQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWRMSAADDSDKSSLHLPQRTLSTHKEELEDESHQQPYDDELIKVSGLWRRPDAASLVSQPKNVVDLIQEDFPRTMSPVYNKSLSESPGLVDKPIDLEVGSSSSHDPPVTTVEAAKTTVGADSIRVSSIVDTHAPVTSSSSLESTGSIGVNDLDVASQLKALGVSNLPRSESLSYEEKWKTSYQMQHAGFQQQNNASDISANSQNVNSVYIGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMNSANPFYTNMQTPGMYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPFVVDGATSSSYNPLTPGVSTGGNISHGTEMVQANKYLGQFGFPLQPSFGDPMYMQYQQQPFVEGYGISGHFDPLAPRASSVNQINPYDSQKRPSTGTYLDDKKLPDQRSATNMNSRRGGLLIPSYFGHMPNMGFLMQYPSSPLPSPVLSGYPEGSPGHLGGNNEIKLSPASGRNGGIMSGWQGQRSFDGGHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLENCSIEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKINFILSAFCGQVAILSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCDLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVELSQHKFASNVVEKCLEYGDATEREMLIAEIFGHGEQSDNLLIMMKDQFANYVVQKVIDICSEKQQAMLLAHVRIHAHALKKYTYGKHIVARLEHQFGENQTPGS 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00249 978 SMART pum_5 650 685 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 722 757 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 794 830 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 686 721 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 758 793 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 867 902 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 831 866 IPR001313 GO:0003723
Vian4g00249 978 SMART pum_5 909 944 IPR001313 GO:0003723
Vian4g00249 978 SUPERFAMILY ARM repeat 634 967 IPR016024 -
Vian4g00249 978 CDD Pumilio 645 966 IPR033712 GO:0003723
Vian4g00249 978 MobiDBLite consensus disorder prediction 514 551 - -
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 831 866 IPR001313 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 909 944 IPR001313 GO:0003723
Vian4g00249 978 Gene3D - 631 975 IPR011989 -
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 915 945 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 726 759 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 691 722 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 654 688 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 769 792 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 871 904 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 836 868 IPR001313 GO:0003723
Vian4g00249 978 Pfam Pumilio-family RNA binding repeat 798 833 IPR001313 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 867 902 IPR001313 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 686 721 IPR001313 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 630 970 IPR033133 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 650 685 IPR001313 GO:0003723
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 722 757 IPR001313 GO:0003723
Vian4g00249 978 MobiDBLite consensus disorder prediction 514 530 - -
Vian4g00249 978 FunFam Pumilio homolog 1 isoform 2 629 976 - -
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 758 793 IPR001313 GO:0003723
Vian4g00249 978 MobiDBLite consensus disorder prediction 1 28 - -
Vian4g00249 978 Pfam Nucleic acid binding protein NABP 293 649 IPR012940 -
Vian4g00249 978 ProSiteProfiles Pumilio RNA-binding repeat profile. 794 830 IPR001313 GO:0003723
Vian4g00249 978 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00249 Vian-Chr4 2636118 2643428 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00249 K17943 - gmx:100811036 1728.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00618 1 6052275 6065971 Vian4g00249 4 2636118 2643428 PCT