Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00618 ATGGCAACTGAGAGTCCAATCAGGATCTCTGAAGCTGGGGGCAAATGGCCTACTCTTAAGGAAGCTGCAACGTTTGGTTCACCATCTCATCATATGGCAACAGAGGATCTGGGTATCTTTTTGAATGGCCATAGGTTCCACGGCAGTGGAAGAGATGTGGTACCCAATCGTAGTGGCAGTGCGCCTCCAAGCATGGAAGGCTCATTTCTTGCCATAGAAAACTTATTATCCCAAAACACCACTAGAAATGCAAGGTTGGGATCTCTCAACAGAGCTGTGCAAAAATATGATAGCGGTAAAGGGTCCTTTCATTTGTCACGAAAAACACTTGCAACACACAAGGAGGAAGCTGAGGATGATTCAACCCAACAGATTTATGATAATGAGTTAGATAAGGCTAGTGGAAAATGGCATAGACAAGATGTGGCTTCAACATCATCTAAGCACAAAAAATTAGTACTGGAAGATCTTCCGCATGCCATGTCACCTGTATATAATAAGTCTCTCGGAGTGGTGGATGAACTAATTGATGTAGATACTGGTTCAAATTCTTCTTATGACCCTTCTGTCTCTACAATGGATGCCATAAAACCTACCATAGGTGGAGATGATATAAGGGTATCATCATATGTTGATTACTCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCAGTGGAAGCATGGGTTTTAATGATTTAGATGTTACAGTTGTAGAATCTCAATTGAGGGCTCTTACTGTATCTAATCTACCAAATTCAGAAAGTCAGAGTTATGAAGATAAATGGAAGAACAGCGTACAGAATAGTTTGATGCAGCAACGTCACCAACAAAACTATCCATGTGAAATTCCTAACAATTCTCAAAGTGAAAAATGTGCATATATTGGTATGGAGCAGCCTCTTCACAGTTCAAGCAAGTTCTCATCTGAGCCTGTATTATCTGTACTGCAATCATCTGGGTATACACCTCCACTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCTTTTTACACTAATTTTCAGGCTTCAGGTATATATTCTCCACCGTATCTAGGTGCATATCCCTTTAGTCCCACAGCTGTTCCTCCGTATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACTGGTACTAGTTTTACTCCCGAAGCAGCAGGGGTTTCTTCTATTGTAGGAAACATTTCACATGGTGCTGAAATGATACATGCAAACAAGGTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGAGCCTTTTTACATGCAATATCATCAACAACCTTTTGTGGAGGGATACAGTATACCTGGTCATCTGCTGACACCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTATGATTCCCAAAAAAGGCCCAATAGTGATAGTGGTGCTTACTTGGATGAAAAAAAATTACATAATCCGAGAAGTGGTGCTAATTTGAATTCTAATAGAGGTGGGATAATGCATCCTGGTTACTTTGGACACCCTTCAAACATGGCTTACGCAACCCAGTATCCAAGTTCTCCACTTTCTAGACCAGTCTTGTCTGGATACCCAGAAAGTAGTTCTGGCCTTCCAGGTGGAAGGAATGAAAGGAGACCCTCTCCAGCTTCTGGCAAAAACGGAGGTTTATTATCTGGATGGCAAAGTCAAAGAGCCTTAGACAGTGCTCCCAACCCAAAAATTGCAATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGACATCATTGGACACATAGTTGAATTTAGGCAATTCATTGTGGTTTTTAACTCCAGCACTGATCAACATGGGAGTCGTTTTATACAGCAGAAGTTGGAAAACTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAATTAATGACTGATGTTTTTGGCAATTACGTAATTCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAAGAACTTGCAAATTGTCTTCTTGGTCAGATACTGCCTTTAAGTCTTCAGATGTATGGCTGTCGTGTAATTCAAAAGGCTCTTGAGGTTATCAATCTTGAACAGAAAGTTCAGCTTGTTCATGAGCTAGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTTTAGAGCATTGTTCGGACGAGGTTCAATGTCAGTTCATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTGCTCAGCATGTGTTGGAGAAAGGAAGGCCTCAGGAAAGGAGTCAAATTATTAGCAAGCTTTCGGGACATATTGTTCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGCTTGGAGTATGGTGATTCCACTGAACGACAGCTGCTAATAACAGAGATTGTTGGACATGACAAACCACATGATAATTTGTTGACAATGATGAAAGATCAATTTGCAAATTATGTGATCCAGAGGATTCTTGAGATCTGTTCTGAAAGTCAAAGAGCGGTGTTACTTTCTCGCATAAGGCTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTTGGGGAAGGAGATAGATGA 2784 0.4066 MATESPIRISEAGGKWPTLKEAATFGSPSHHMATEDLGIFLNGHRFHGSGRDVVPNRSGSAPPSMEGSFLAIENLLSQNTTRNARLGSLNRAVQKYDSGKGSFHLSRKTLATHKEEAEDDSTQQIYDNELDKASGKWHRQDVASTSSKHKKLVLEDLPHAMSPVYNKSLGVVDELIDVDTGSNSSYDPSVSTMDAIKPTIGGDDIRVSSYVDYSAPVTSSSSLNSSGSMGFNDLDVTVVESQLRALTVSNLPNSESQSYEDKWKNSVQNSLMQQRHQQNYPCEIPNNSQSEKCAYIGMEQPLHSSSKFSSEPVLSVLQSSGYTPPLYATAAAYMTSTNPFYTNFQASGIYSPPYLGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGTSFTPEAAGVSSIVGNISHGAEMIHANKVFGQFGFPLQPSFGEPFYMQYHQQPFVEGYSIPGHLLTPRASVGGQIGPYDSQKRPNSDSGAYLDEKKLHNPRSGANLNSNRGGIMHPGYFGHPSNMAYATQYPSSPLSRPVLSGYPESSSGLPGGRNERRPSPASGKNGGLLSGWQSQRALDSAPNPKIAIFLEELKSGKGRRFELSDIIGHIVEFRQFIVVFNSSTDQHGSRFIQQKLENCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANCLLGQILPLSLQMYGCRVIQKALEVINLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVAQHVLEKGRPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLITEIVGHDKPHDNLLTMMKDQFANYVIQRILEICSESQRAVLLSRIRLHAHALKKYTYGKHIVARFEQLLGEGDR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 710 745 IPR001313 GO:0003723
Vian1g00618 927 Gene3D - 575 923 IPR011989 -
Vian1g00618 927 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 573 922 IPR033133 GO:0003723
Vian1g00618 927 SMART pum_5 710 745 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 819 854 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 638 673 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 746 782 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 783 818 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 600 637 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 674 709 IPR001313 GO:0003723
Vian1g00618 927 SMART pum_5 861 896 IPR001313 GO:0003723
Vian1g00618 927 CDD Pumilio 588 917 IPR033712 GO:0003723
Vian1g00618 927 MobiDBLite consensus disorder prediction 524 559 - -
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 783 818 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 788 820 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 645 672 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 678 711 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 750 785 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 721 745 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 823 856 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 611 640 IPR001313 GO:0003723
Vian1g00618 927 Pfam Pumilio-family RNA binding repeat 865 898 IPR001313 GO:0003723
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 819 854 IPR001313 GO:0003723
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 674 709 IPR001313 GO:0003723
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 855 896 IPR001313 GO:0003723
Vian1g00618 927 FunFam Pumilio homolog 1 isoform 2 573 926 - -
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 746 782 IPR001313 GO:0003723
Vian1g00618 927 SUPERFAMILY ARM repeat 609 918 IPR016024 -
Vian1g00618 927 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 269 920 - -
Vian1g00618 927 MobiDBLite consensus disorder prediction 457 495 - -
Vian1g00618 927 ProSiteProfiles Pumilio RNA-binding repeat profile. 638 673 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00618 Vian-Chr1 6052275 6065971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00618 K17943 - gmx:100819166 1459.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00618 1 6052275 6065971 Vian4g00249 4 2636118 2643428 PCT