Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00247 ATGGCAGTTTCCATGAGAGATCTGGATCCAGCTTTTCAGGGAGCTGGACAAAAGGCTGGACTTGAGATATGGCGTATTGAGAATTTTAATCCAGTTCCTGTTCCAAAGTCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTTTGCGGCATGATGTCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCTGCAGCCATCAAAACAGTTGAGCTAGATGCAGCTCTCGGAGGACGTGCTGTTCAGTATCGTGAAGTGCAAGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCATGTATTATCCCTCAAGAAGGTGGAGTTGCTTCCGGTTTCAAACATCTTGAGGCTGAAAAGCATAAGACACGGTTGTTTGTATGCAGGGGAAAACATGTTGTACATGTCAAAGAGGTTCCATTTGCTAGAGCTTCACTGAACCATGATGATATTTTTGTTCTGGATACTGAATCAAAAATTTTCCAATTTAATGGTTCCAATTCATCAATCCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAGGATACCTACCATGATGGAAAATGTGATGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATCCTGAAACTGGGGAATTCTGGGGTTTCTTTGGGGGATTTGCTCCTCTTCCAAGAAAAACAGCCGGTGATGATGATAAGCCTACTGATTCTAGCCCTCCGAAGCTGCTCTGCATTGAAAAGGGACAGGCAGAACCTGTGGAGGCTGCTGATTCTTTGAAAAGAGAATTACTAGACACAAATAAATGCTATATTCTTGATTGTGGGGTTGAAGTGTTTGTCTGGATGGGTAGAAATACTTCTCTTGATGAAAGAAAAAGTGCAAGTGGAGTTGCAGATGAGTTAGTCAGAGGCATTGATAAACTGAAACCCCAAATAATTCGTGTGATAGAAGGATTTGAAACAGTAATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACTGATGTGACAGTATCTGAAGATGGTCGTGGCAAGGTAGCTGCTCTTCTAAAACGCCAAGGAGTTAATGTGAAGGGTTTGTTGAAAGCTGATCCAGTGAGGGAAGAACCTCAACCCCACATTGATTGCACAGGGCATTTGCAGGTTTGGCGCGTGAATGGTCAGGAAAAGATTCTTCTTCAAGCTTCTGATCAGTCAAAATTTTATAGTGGAGATTGCTACATCTTTCAGTATACATATCCTGGAGAGGATAAAGAAGATTGTCTTATTGGAACGTGGATCGGAAAAAATAGTGTTGAGGAAGAACAAGCTTCAGCTAACTCATTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTGCTTGCCAGGCTCGTATATATGAAGGCAATGAACCAGTTCAATTTCATTCTATCGTTCAAAGCTTCATTGTTTTTAAGGGTGGGCTTGGTGAAGGATACAAGGCTTACATTGCTGGAAAGGAAATTCCTGATGAGACATACAATGAGAATGGTGTTGCATTGTTCCGCATCCAAGGCTCTGGACCAGATAATATGCAAGCGATACAAGTTGAACCAGTTGCGTCTTCCTTGAATTCCTCTTACTGTTACATACTTCATAATGGGCCAGCTGTCTTTACTTGGTCCGGAAACTCTACTAGTGCAGAAGACCAGGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCCAAACCACAGAGGGAAGGTTCTGAATCTGAACAGTTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATCGTTAGAGAGGCTGAAAGTGATCCTCACCTATTTTCTTGTCACTTCTCAAAAGGAAATTTAAAGGTGACAGAGGTATACAACTTCTCCCAGGATGATTTGATGACAGAAGACATTTTCATCTTGGATTGTCATTTGGAAGTCTTTGTCTGGGTTGGACAGCAGGTTGACCCCAAAAGTAGATTGCAGGCTCTAACAATTGGCGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAGTTATCTAGTGTAGCTCCAATATATGTTATCATGGAAGGGAGTGAGCCACCTTTTTTCACGCGCTTCTTTAAATGGGATTCTGCAAAATCTGCAATGCTGGGAAACTCATTCCAAAGGAAGCTAACGCTTGTGAAAAGTGGGGGTGCTCCCCTTTTGGATAAACCCAAACGGAGAACACCGGTATCTTATGGGGGAAGGTCAAGTAGTGTGCCAGATAAATCCCAGCGTTCATCCCGCAGCATGTCTGTCAGCCCTGATCGTGTTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCTCTGGCAGCTACTTTCGAGAATCCTAATGCTAGGAACCTTTCAACCCCGCCTCCAGTAGTTAGAAAGCTCTATCCAAAATCCGTGACACCAGACTCTGCAATACTGGCACCAAAATCTGCAGCCATAGCTGCACTTAGTTCTTCTTTTGAACAGCCACCTTCAGCACGGGAAACTATGATACCTCGGTCACTTAAAGTGAGTCCAGTAATGCCTAAACCAAACCCTGAAAAAATTGACAAGGAGAATTCTGTGGGCACCAGAGTTGAATCTCTTACCATACAGGAAGATGTGAAAGAGAATGAAGTTGAAGATGAGGAAGGGCTTGTGATTCATCCGTATGAACGCCTTAAAATAACATCCACAGATCCTGTAACAAGTATTGATATCACTAAGCGCGAGACTTATCTATCATCTGCGGAGTTCAAAGAGAAATTTGGGATGTCCAAGGATGCCTTTTACAAGTTGCCCAAATGGAAACAAAACAAACTCAAAATGGCTGTTCAGTTATTCTGA 2892 0.4236 MAVSMRDLDPAFQGAGQKAGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDVHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGVASGFKHLEAEKHKTRLFVCRGKHVVHVKEVPFARASLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCDVAAVEDGKLMADPETGEFWGFFGGFAPLPRKTAGDDDKPTDSSPPKLLCIEKGQAEPVEAADSLKRELLDTNKCYILDCGVEVFVWMGRNTSLDERKSASGVADELVRGIDKLKPQIIRVIEGFETVMFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPHIDCTGHLQVWRVNGQEKILLQASDQSKFYSGDCYIFQYTYPGEDKEDCLIGTWIGKNSVEEEQASANSLASKMVESMKFLACQARIYEGNEPVQFHSIVQSFIVFKGGLGEGYKAYIAGKEIPDETYNENGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGNSTSAEDQELVERMLDLIKPNLQSKPQREGSESEQFWDLLGGKSEYPSQKIVREAESDPHLFSCHFSKGNLKVTEVYNFSQDDLMTEDIFILDCHLEVFVWVGQQVDPKSRLQALTIGEKFLEHDFLLEKLSSVAPIYVIMEGSEPPFFTRFFKWDSAKSAMLGNSFQRKLTLVKSGGAPLLDKPKRRTPVSYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAATFENPNARNLSTPPPVVRKLYPKSVTPDSAILAPKSAAIAALSSSFEQPPSARETMIPRSLKVSPVMPKPNPEKIDKENSVGTRVESLTIQEDVKENEVEDEEGLVIHPYERLKITSTDPVTSIDITKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAVQLF 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00247 963 Gene3D Severin 7 132 IPR029006 -
Vian4g00247 963 CDD gelsolin_S4_like 389 486 - -
Vian4g00247 963 CDD gelsolin_S3_like 254 344 - -
Vian4g00247 963 PANTHER VILLIN 7 953 IPR007122 GO:0051015
Vian4g00247 963 CDD gelsolin_S2_like 138 223 - -
Vian4g00247 963 PRINTS Gelsolin family signature 533 553 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 645 667 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 437 455 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 412 428 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 593 612 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 324 345 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Vian4g00247 963 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Vian4g00247 963 FunFam Villin-like 1 901 963 - -
Vian4g00247 963 MobiDBLite consensus disorder prediction 742 783 - -
Vian4g00247 963 Gene3D Severin 389 501 IPR029006 -
Vian4g00247 963 Pfam Villin headpiece domain 928 963 IPR003128 GO:0003779|GO:0007010
Vian4g00247 963 CDD gelsolin_S1_like 12 124 - -
Vian4g00247 963 SMART VILL_6 19 117 IPR007122 GO:0051015
Vian4g00247 963 SMART VILL_6 623 720 IPR007122 GO:0051015
Vian4g00247 963 SMART VILL_6 137 234 IPR007122 GO:0051015
Vian4g00247 963 SMART VILL_6 520 607 IPR007122 GO:0051015
Vian4g00247 963 SMART VILL_6 254 345 IPR007122 GO:0051015
Vian4g00247 963 SMART VILL_6 393 490 IPR007122 GO:0051015
Vian4g00247 963 Gene3D Villin headpiece domain 901 963 IPR036886 GO:0003779|GO:0007010
Vian4g00247 963 FunFam Gelsolin 521 613 - -
Vian4g00247 963 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 261 428 IPR036180 -
Vian4g00247 963 SUPERFAMILY Actin depolymerizing proteins 137 238 - -
Vian4g00247 963 FunFam Villin-like 1 132 247 - -
Vian4g00247 963 FunFam Gelsolin 6 131 - -
Vian4g00247 963 SMART VHP_1 928 963 IPR003128 GO:0003779|GO:0007010
Vian4g00247 963 SUPERFAMILY Actin depolymerizing proteins 383 529 - -
Vian4g00247 963 Gene3D Severin 518 613 IPR029006 -
Vian4g00247 963 Gene3D Severin 248 357 IPR029006 -
Vian4g00247 963 SUPERFAMILY VHP, Villin headpiece domain 888 963 IPR036886 GO:0003779|GO:0007010
Vian4g00247 963 ProSiteProfiles Headpiece (HP) domain profile. 898 963 IPR003128 GO:0003779|GO:0007010
Vian4g00247 963 FunFam Villin-4 386 520 - -
Vian4g00247 963 CDD gelsolin_S5_like 518 609 - -
Vian4g00247 963 FunFam Villin-like 1 614 735 - -
Vian4g00247 963 CDD gelsolin_S6_like 622 721 - -
Vian4g00247 963 Pfam Gelsolin repeat 150 215 IPR007123 -
Vian4g00247 963 Pfam Gelsolin repeat 638 713 IPR007123 -
Vian4g00247 963 Pfam Gelsolin repeat 270 338 IPR007123 -
Vian4g00247 963 Pfam Gelsolin repeat 28 111 IPR007123 -
Vian4g00247 963 Pfam Gelsolin repeat 411 462 IPR007123 -
Vian4g00247 963 Gene3D Severin 133 247 IPR029006 -
Vian4g00247 963 Gene3D Severin 614 734 IPR029006 -
Vian4g00247 963 MobiDBLite consensus disorder prediction 756 778 - -
Vian4g00247 963 SUPERFAMILY Actin depolymerizing proteins 596 718 - -
Vian4g00247 963 SUPERFAMILY Actin depolymerizing proteins 511 613 - -
Vian4g00247 963 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00247 Vian-Chr4 2589226 2604310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00247 - - gmx:100808499 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00247 4 2589226 2604310 Vian1g00621 1 6080071 6094873 PCT