Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00621 ATGCTCGCTATTTACCCACTGAAACCAGAGAAGAAGAAGAAGAAAAGAGAGAATGAACTTTCTCGCCTAGGTGATTGCTTGGTAACAACAAGTGGACTTGAAATATGGCGTATCGAGAATTTTAATCCAGTTCCTATCCCTCAGTCATCTCATGGAAAGTTTTTCACTGGGGATTCCTATATGATCTTGAAGACAACTGCTTCAAAAAGTGGTGCTCTGCGTTATGATATCCATTATTGGCTTGGTAAAGAGACCAGTCAGGATGAGGCTGGTGCTGCAGCCATCAAGACAGTCGAGTTGGATGCAGCTCTGGGAGGACGGGCTGTTCAGTATCGTGAAGTACAAGGCCACGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGCATCATACCTCAAGAAGGTGGAGCTGCCTCTGGTTTTAAACATGTGGAGGCCGAAAAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTGGTTCCATTTGCTCGATCTTCGCTAAACCACGATGATGTTTTTATTCTGGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAACTCATGTATTCAAGAAAGGGCCAAAGCATTGGAGGTTGTACAGTTTATTAAGGATACCTACCATGATGGGAAATGTGAGATAGCTTCCGTTGAGGATGGAAAGTTGATGTCTGATTCTGAAAGTGGAGAATTCTGGGCTTGCTTCGGGGGCTTTGCTCCTCTTCCACGGAGAACAGTCAGTGATGATGATAAGTTTGCTGATTCTCATCCTCCAGAACTACTTTGTGTTGGCAAGGGGAAGACAGAACCTGTTGAAACTGATTCCTTGAGAAAGGAATTGCTGGAGACAAACAAATGCTATATTTTAGATTGTGGGTTGGAGAAGTTAGTCAGTGGCACTGGTCGACCAAAGTCCCATATAGTTCGTGTAATTGAAGGATTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCGGGCATCTCAAGTGATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTCTTAAAATCTGAACCTGTAAAAGAAGAACCTCAACCCTATATAGATTGCACAGGACATTTGCAGGTTTGGCGTGTTAATAGCAAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTGTATAGTGGAGATTGCTACATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAACATCTTATAGGAACATGGGTTGGAAAGACCAGTATTGAGGGTGGACTTAGTGATGGATACAAGAATTACATTGCAGAGAAGGAAATTCCAGATGAGACATACAGTGAGGATGGTCTTGCATTATTCCGCATCCAGGGTTTTGGGCCAGACAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCACTTACTGCTACATACTTCATAGTGATTCAACTGTTTTTACGTGGTCTGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTGTTGACAGAATGCTGGATTTGATTAAGCCGGATTTACCATGCAAATCACATAAGGAAGGCGTAGAATCGGAATTGTTTTGGGATTTGTTGGGAGGAAAATCAGAACATCCCAGTCAAAAGATCGAGAGGGATGAAGAAAGCGACCCTCACCTATTTTCTTGCGACTTCTCAAAAGGAACTTTAAAGGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTGCATCTTGGATTGTCACTCTGAAATCTTCGTCTGGGTTGGCCAGCAGGTTGACCCAAAGAGTAAAATACAGGCTCTAACAATTGAAAATTTATCTCGTGAAGCTCCAATATATATTGTCATGGAAGGCAGTGAGCCTCCTTTCTTCACTCGCTTCTTTAAATGGGAGTCTGCGAAATCTGCTATGCTGGGAAACTCGTTTCAAAGGAAGCTTGCAATCCTCAAAAATGGGGGAGCGGCACTCGTACTTAAACATAAGCGAAGAGCATCAGTATCTTATGGGGGAAGGTCCGGTGGTGTGCCAGATAAATCTCAGCGTTCCCGTAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCGGCCTTTAATGCTCTAGCAGCTAATTTTGAGAACACAAATACAAGGAACCTTTCAACTCCACCTCCAATGGTTAGAAAATTGTACCCAAAATCTGGGGCACAGGATACAGCGAAACCGGCATCTAAATTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACTACCATCAGCTCGAGAAAATTTGATTCCTCGGTCCCAAAAAGTGGGTTCAGTTACCACCATATCAAACCCAGAGACAATTGACAATGAGGTTTCTATGAGCAAGAGAATAGAATCTCTTACCATAAAGGAGGATGTGCAAGAGGGTGAAGCTGAAGATGATGAAAGTTTCCCAGTTCACCCATATGATCGCATTAACACAGATTCTACAGATCCTATAACAGATATTGACGTTACTAAACGAGAGGCTTATTTGTCACCTGCCGAGTTCCAAGAGAAATTAGGGATGGATAAGAATGAATTTTACAAGTTACCAAAATGGAAACAGAACAAACTCAAGATGGCAGTTCGCTTATTCTGA 2664 0.4208 MLAIYPLKPEKKKKKRENELSRLGDCLVTTSGLEIWRIENFNPVPIPQSSHGKFFTGDSYMILKTTASKSGALRYDIHYWLGKETSQDEAGAAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEKHKTRLFVCKGKHVVPFARSSLNHDDVFILDTESKIFQFNGSNSCIQERAKALEVVQFIKDTYHDGKCEIASVEDGKLMSDSESGEFWACFGGFAPLPRRTVSDDDKFADSHPPELLCVGKGKTEPVETDSLRKELLETNKCYILDCGLEKLVSGTGRPKSHIVRVIEGFETVMFKSKFDSWPRASQVMSEDGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGHLQVWRVNSKEKILLPATDQSKLYSGDCYIFQYSYPGEDKEEHLIGTWVGKTSIEGGLSDGYKNYIAEKEIPDETYSEDGLALFRIQGFGPDNMQAIQVEPVASSLNSTYCYILHSDSTVFTWSGGLATSDDQELVDRMLDLIKPDLPCKSHKEGVESELFWDLLGGKSEHPSQKIERDEESDPHLFSCDFSKGTLKVKEIYNFSQDDLMTEDICILDCHSEIFVWVGQQVDPKSKIQALTIENLSREAPIYIVMEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAILKNGGAALVLKHKRRASVSYGGRSGGVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNTRNLSTPPPMVRKLYPKSGAQDTAKPASKFSAISHLTSSFELPSARENLIPRSQKVGSVTTISNPETIDNEVSMSKRIESLTIKEDVQEGEAEDDESFPVHPYDRINTDSTDPITDIDVTKREAYLSPAEFQEKLGMDKNEFYKLPKWKQNKLKMAVRLF 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00621 887 Gene3D Severin 456 549 IPR029006 -
Vian1g00621 887 PANTHER VILLIN 29 431 IPR007122 GO:0051015
Vian1g00621 887 SUPERFAMILY Actin depolymerizing proteins 315 430 - -
Vian1g00621 887 MobiDBLite consensus disorder prediction 682 706 - -
Vian1g00621 887 Gene3D Villin headpiece domain 825 887 IPR036886 GO:0003779|GO:0007010
Vian1g00621 887 SMART VHP_1 852 887 IPR003128 GO:0003779|GO:0007010
Vian1g00621 887 SMART VILL_6 149 241 IPR007122 GO:0051015
Vian1g00621 887 SMART VILL_6 561 646 IPR007122 GO:0051015
Vian1g00621 887 SMART VILL_6 261 329 IPR007122 GO:0051015
Vian1g00621 887 SMART VILL_6 31 129 IPR007122 GO:0051015
Vian1g00621 887 SMART VILL_6 376 454 IPR007122 GO:0051015
Vian1g00621 887 SMART VILL_6 455 544 IPR007122 GO:0051015
Vian1g00621 887 Gene3D Severin 550 660 IPR029006 -
Vian1g00621 887 Gene3D Severin 145 257 IPR029006 -
Vian1g00621 887 CDD gelsolin_S6_like 559 645 - -
Vian1g00621 887 Pfam Villin headpiece domain 852 887 IPR003128 GO:0003779|GO:0007010
Vian1g00621 887 FunFam Gelsolin 456 550 - -
Vian1g00621 887 ProSiteProfiles Headpiece (HP) domain profile. 822 887 IPR003128 GO:0003779|GO:0007010
Vian1g00621 887 SUPERFAMILY Actin depolymerizing proteins 533 644 - -
Vian1g00621 887 MobiDBLite consensus disorder prediction 813 840 - -
Vian1g00621 887 CDD gelsolin_S2_like 150 239 - -
Vian1g00621 887 Pfam Gelsolin repeat 577 637 IPR007123 -
Vian1g00621 887 Pfam Gelsolin repeat 40 123 IPR007123 -
Vian1g00621 887 Pfam Gelsolin repeat 161 224 IPR007123 -
Vian1g00621 887 CDD gelsolin_S1_like 32 136 - -
Vian1g00621 887 Gene3D Severin 25 144 IPR029006 -
Vian1g00621 887 PRINTS Gelsolin family signature 308 329 IPR007122 GO:0051015
Vian1g00621 887 PRINTS Gelsolin family signature 530 549 IPR007122 GO:0051015
Vian1g00621 887 PRINTS Gelsolin family signature 582 604 IPR007122 GO:0051015
Vian1g00621 887 PRINTS Gelsolin family signature 470 490 IPR007122 GO:0051015
Vian1g00621 887 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 263 411 IPR036180 -
Vian1g00621 887 SUPERFAMILY VHP, Villin headpiece domain 813 887 IPR036886 GO:0003779|GO:0007010
Vian1g00621 887 FunFam Villin-like 1 144 254 - -
Vian1g00621 887 SUPERFAMILY Actin depolymerizing proteins 449 553 - -
Vian1g00621 887 SUPERFAMILY Actin depolymerizing proteins 30 159 - -
Vian1g00621 887 FunFam Gelsolin 22 143 - -
Vian1g00621 887 CDD gelsolin_S5_like 458 546 - -
Vian1g00621 887 SUPERFAMILY Actin depolymerizing proteins 141 254 - -
Vian1g00621 887 Gene3D Severin 368 439 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00621 Vian-Chr1 6080071 6094873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00621 - - gmx:100807762 1465.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00621 1 6080071 6094873 Vian1g00621 1 6080071 6094873 ECH
Vian4g00247 4 2589226 2604310 Vian1g00621 1 6080071 6094873 PCT