Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00147 ATGCCCGCTCCCGTCTCCATTGCCTCCTTTCTCTTCCTCTCTCGCCGGTGCCTTCTCTCTCTCTTTCCAAATTCAAGGGAAATTCTAACGTTTTCCCTAACGATCTTGGGATTGGAGGGTGTTCTTGCAATGGAGGGGGAACCGAGCCAGCTGAAACGGGCTGCGATTGATGCCACCGCCGGAGCTCTTTCCGGCGCTGTATCCAGGACCGTCACGTCGCCTCTTGATGTTATTAAGATTAGGTTTCAGGTTCAACTAGAACCCACATCTTCATGGGCTTTACTACGCAAGGATTTGTCTACTCCTTCAAAATATACCAGCATGGTTCAAGCAAGCAAAGATATTTTCAGAGAAGAAGGCATACGGGGTTTTTGGCGGGGAAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAAGTATACAATTTACTGTTGTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAAACAGTTCAAAGCCGTGTCAATCTGCAATCTAGAGTTATTAATTACTTGGGCATTTCCTGTTGTAGGTCTATTATGTTCATTGCTTTGCTTTCTGTTGCTGCAGAGAATCACATGAATCTGAGCCCTTATCTATCCTATATGAGTGGGGCAATAGCTGGGAGTGCTGCTACTGTAGGTTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCCCAGGGTGAACCCAAGGTTTATCCAAACATGAGAACGGCATTTGTTGATATTGTGCAGACTCGTGGCTTCCAAGGCTTGTATGCTGGATTGTCACCAACCCTAGTTGAGATTATACCATATGCAGCTCTACAATTTGGCACCTATGATACATTTAAACGTTGGACCATGGCGTGGAATCAACGTCAATATTCGAATTCTACTGCAGAAAACATCTCTAGCTTTCAGCTTTTCCTCTGTGGAGTGAGTGCAGGAACATGTGCCAAGCTCGCCACTCATCCACTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACACCGTGCATACAGCAATATGCTTGATGCCATAAAGCGAATATTACAAATGGAGGGTTGGGCTGGTCTATATAAGGGGATAGTCCCATCAACTGTTAAAGCTGCACCAGCTAATGCTGTAACATTTGTGGCGTATGAATTGACATCAGACTGGCTGGAATCTCTTTTGACTTGA 1215 0.4486 MPAPVSIASFLFLSRRCLLSLFPNSREILTFSLTILGLEGVLAMEGEPSQLKRAAIDATAGALSGAVSRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSTPSKYTSMVQASKDIFREEGIRGFWRGNVPALLMVMPYTSIQFTVVHKLKTFASGSSKTVQSRVNLQSRVINYLGISCCRSIMFIALLSVAAENHMNLSPYLSYMSGAIAGSAATVGSYPFDLLRTILASQGEPKVYPNMRTAFVDIVQTRGFQGLYAGLSPTLVEIIPYAALQFGTYDTFKRWTMAWNQRQYSNSTAENISSFQLFLCGVSAGTCAKLATHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMLDAIKRILQMEGWAGLYKGIVPSTVKAAPANAVTFVAYELTSDWLESLLT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00147 404 ProSiteProfiles Solute carrier (Solcar) repeat profile. 301 398 IPR018108 -
Vian4g00147 404 PRINTS Mitochondrial carrier protein signature 70 84 IPR002067 GO:0055085
Vian4g00147 404 PRINTS Mitochondrial carrier protein signature 310 332 IPR002067 GO:0055085
Vian4g00147 404 PRINTS Mitochondrial carrier protein signature 257 275 IPR002067 GO:0055085
Vian4g00147 404 PRINTS Mitochondrial carrier protein signature 57 70 IPR002067 GO:0055085
Vian4g00147 404 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 284 IPR018108 -
Vian4g00147 404 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 152 IPR018108 -
Vian4g00147 404 Pfam Mitochondrial carrier protein 57 153 IPR018108 -
Vian4g00147 404 Pfam Mitochondrial carrier protein 301 399 IPR018108 -
Vian4g00147 404 Pfam Mitochondrial carrier protein 199 285 IPR018108 -
Vian4g00147 404 SUPERFAMILY Mitochondrial carrier 52 393 IPR023395 -
Vian4g00147 404 Gene3D Mitochondrial carrier domain 23 168 IPR023395 -
Vian4g00147 404 Gene3D Mitochondrial carrier domain 169 402 IPR023395 -
Vian4g00147 404 PANTHER SOLUTE CARRIER FAMILY 25 54 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00147 Vian-Chr4 1343184 1347402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00147 47 404 Organic Solute Cotransporters AT3G21390 66.116 1.71e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00147 K15108 - gmx:100803750 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00147 4 1343184 1347402 Vian4g00147 4 1343184 1347402 ECH
Vian1g00260 1 2293744 2297279 Vian4g00147 4 1343184 1347402 PCT