Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00260 ATGGAGGAACCGAGTAAACTGAAGCGTGCCTTGATTGATTCCTCGGCCGGAGCAATTTCCGGAGGAATATCACGGACTGTTACCTCGCCCCTCGATGTTATAAAGATTCGATTCCAGGTTCAACTGGAGCCCACATCTTCGTGGGCTTTACTACGTAAGGATTTGGCTGCAGCTGCGTCTGCACCATCAAAATATACTGGCATGTTTCAAGCAACCAAGGATATTCTTAGAGAAGAAGGCGTTCAGGGATTTTGGCGGGGAAATGTCCCGGCATTGCTCATGGTTATGCCGTATACAGCTATACAGTTTACAGTTTTACATAAGTTGAAGACTTTTGTCTCTGGCTCTTCAAAGACAGAGAATCACATTAATTTGAGCCCTTATCTTTCCTATGTCAGTGGAGCATTAGCTGGGTGTGCAGCTACAGTAGGTTCATACCCCTTTGATCTTCTCCGTACCATATTAGCATCTCAGGGTGAACCGAAGGTATATCCAACCATGAGATCAGCATTCATTGATATTGTTCGTACACGTGGATTCCAAGGCTTGTATTCCGGACTGTCCCCTACTCTAGTGGAGATTATACCTTATGCAGGTCTACAATTTGGCACGTATGATACATTTAAGCGTTGGGCCATGGCTTTGAATCATAGATTTTCGAACGCTGCTGCAGAAGACAACATCTCTAGCTTTCAGCTTTTCCTTTGTGGGTTAGCAGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTCGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGACATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAACATGTTGGATGCCATGCAACGGATATTGCGATTAGAGGGTTGGGCTGGTTTGTACAAGGGGATAATCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTTACATTTGTTGCTTATGAGTTGACATCAGATTGGCTAGAATCCACTTTTAGTTGA 996 0.4468 MEEPSKLKRALIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAAASAPSKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFVSGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFIDIVRTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMALNHRFSNAAAEDNISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMLDAMQRILRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Vian1g00260 331 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Vian1g00260 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
Vian1g00260 331 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 328 - -
Vian1g00260 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Vian1g00260 331 Gene3D Mitochondrial carrier domain 5 329 IPR023395 -
Vian1g00260 331 PANTHER SOLUTE CARRIER FAMILY 25 14 326 - -
Vian1g00260 331 Pfam Mitochondrial carrier protein 228 327 IPR018108 -
Vian1g00260 331 Pfam Mitochondrial carrier protein 14 114 IPR018108 -
Vian1g00260 331 Pfam Mitochondrial carrier protein 126 213 IPR018108 -
Vian1g00260 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Vian1g00260 331 SUPERFAMILY Mitochondrial carrier 8 320 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00260 Vian-Chr1 2293744 2297279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00260 1 331 Organic Solute Cotransporters AT3G21390 72.917 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00260 K15108 - gmx:100784986 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00260 1 2293744 2297279 Vian4g00147 4 1343184 1347402 PCT