Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00144 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACAGTGGTGTTGGCTGAGTACACCGAGTTCACCGGAAACTTCCCCGCCATTGCAGCTCAGTGTCTTCACAAGCTTCCCTCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTTCTGGTTGAGGATGGTTATGCATACTGTGTTGTTGCCAAGGAATCTGTTGGCAAGCAGATCTCTATTGCTTTCCTTGAACGGGTGAAAGCAGACTTTAAGAAAAGATATGGTGGTGGAAAAGCAGATACAGCTATTGCTAAGAGTCTGAACAAGGAGTTTGGACCAGTTATGAAAGGGCACATGAAGTATATCATCGATCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAGAGTATTATGTTGGAAAACATAGACAAGGCCATTGAAAGAGGAGAAAATCTAACTATTCTTGCAGATAAGACAGAGACATTGCGTTCACAGGCTCAAGATTTCAGAAAGCAAGGAGCACAAGTTCATCGAAAGATGTGGTATCAGAACATGAAAATTAAACTAGTTGTTCTGGGAATTTTGTTGTTTTTGGTATTGGTTATCTGGCTTTCTATTTGTGGTGGATTTGACTGTACAAACTAG 666 0.4084 MSQESFIYSFVARGTVVLAEYTEFTGNFPAIAAQCLHKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVGKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEFGPVMKGHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIERGENLTILADKTETLRSQAQDFRKQGAQVHRKMWYQNMKIKLVVLGILLFLVLVIWLSICGGFDCTN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00144 221 CDD R-SNARE 129 188 - -
Vian4g00144 221 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016020|GO:0016192
Vian4g00144 221 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016020|GO:0016192
Vian4g00144 221 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016020|GO:0016192
Vian4g00144 221 FunFam Vesicle-associated membrane protein 726 128 214 - -
Vian4g00144 221 Gene3D - 127 214 - -
Vian4g00144 221 SMART Longin_2 31 113 IPR010908 -
Vian4g00144 221 Pfam Synaptobrevin 129 215 IPR042855 -
Vian4g00144 221 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Vian4g00144 221 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Vian4g00144 221 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Vian4g00144 221 CDD Longin 7 120 IPR010908 -
Vian4g00144 221 PANTHER SNARE PROTEINS 3 215 - -
Vian4g00144 221 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016020|GO:0016192
Vian4g00144 221 Gene3D Longin domain 1 126 - -
Vian4g00144 221 SUPERFAMILY SNARE-like 6 120 IPR011012 -
Vian4g00144 221 SUPERFAMILY SNARE fusion complex 126 192 - -
Vian4g00144 221 FunFam Vesicle-associated membrane protein 724 1 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00144 Vian-Chr4 1307853 1309789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00144 1 220 Miscellaneous Gene Families AT1G04760 68.182 7.63e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00144 K08511 - gmx:100527252 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00144 4 1307853 1309789 Vian4g00144 4 1307853 1309789 ECH
Vian1g00264 1 2340236 2343497 Vian4g00144 4 1307853 1309789 PCT