Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00264 ATGAGGCAGTGTAGTTTAAGTAAGGAACAAATCCAATCAAATCGAGGAAACCGGGGAAAAAGACCAAGAAAAAGTAGAAACCAAACGCGGCCTTCAAGTTCCAAATACCAACAACTAAGTAAACAACTTCTCTTTCCTGTCTCTTTCTCTCTTTCTCTCTCTGCTTCTGAGTTCCGAGTTGCAGAGAGAGCAATGAGTCAGGAATCGTTTATATACAGCTTCGTGGCTCGGGGGACGGTGGTGTTAGCTGAGTACACCGAGTTCACCGGGAACTTCCCTGCAATTGCAGCTCAGTGTCTCCAGAAACTACCCTCTTCCAATAACAAGTTCACCTACAATTGTGACCACCACACCTTCAATTTTCTCGTCGAAGATGGTTACGAACGTGTCAAAGCGGACTTTAGGAAAAGATATGGGGGTGGAAAGGCTGACACAGCTGTTGCCAAAAGTCTCAACAAGGAGTTTGGACCAGTAATGAAAGAGCACATGAAGTATATAATAGACCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAGAGTATCATGTTAGAGAACATTGATAAGGCCATTGATAGAGGAGAAAATCTAACTATTCTTGCCGACAAGTCTGAGACATTGCACTCACAAGCCCAGGAGTTCAGAAAGAAGGGAACTCAAGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTTTGTTGCTTTTGGTTCTGGTTATCTGGCTTTCTGTCTGCCATGGATTCAACTGTGCAAATTAA 801 0.4232 MRQCSLSKEQIQSNRGNRGKRPRKSRNQTRPSSSKYQQLSKQLLFPVSFSLSLSASEFRVAERAMSQESFIYSFVARGTVVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYERVKADFRKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKSETLHSQAQEFRKKGTQVRRKMWYQNMKIKLVVLGILLLLVLVIWLSVCHGFNCAN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00264 266 SUPERFAMILY SNARE-like 70 166 IPR011012 -
Vian1g00264 266 SUPERFAMILY SNARE fusion complex 171 237 - -
Vian1g00264 266 CDD Longin 71 165 IPR010908 -
Vian1g00264 266 CDD R-SNARE 174 233 - -
Vian1g00264 266 Gene3D Longin domain 55 127 - -
Vian1g00264 266 Gene3D Longin domain 128 171 - -
Vian1g00264 266 PANTHER SNARE PROTEINS 67 127 - -
Vian1g00264 266 PRINTS Synaptobrevin signature 236 255 IPR001388 GO:0016020|GO:0016192
Vian1g00264 266 PRINTS Synaptobrevin signature 180 199 IPR001388 GO:0016020|GO:0016192
Vian1g00264 266 PRINTS Synaptobrevin signature 200 219 IPR001388 GO:0016020|GO:0016192
Vian1g00264 266 Gene3D - 172 240 - -
Vian1g00264 266 ProSiteProfiles Longin domain profile. 74 127 IPR010908 -
Vian1g00264 266 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 175 235 IPR042855 -
Vian1g00264 266 FunFam Vesicle-associated membrane protein 726 173 259 - -
Vian1g00264 266 ProSitePatterns Synaptobrevin signature. 193 212 IPR001388 GO:0016020|GO:0016192
Vian1g00264 266 SMART Longin_2 95 158 IPR010908 -
Vian1g00264 266 MobiDBLite consensus disorder prediction 1 35 - -
Vian1g00264 266 Pfam Synaptobrevin 174 260 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00264 Vian-Chr1 2340236 2343497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00264 65 265 Miscellaneous Gene Families AT1G04760 63.182 2.54e-98 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00264 K08511 - gmx:100781950 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00264 1 2340236 2343497 Vian1g00264 1 2340236 2343497 ECH
Vian1g00264 1 2340236 2343497 Vian4g00144 4 1307853 1309789 PCT