Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00142 ATGGCTGCAAAACCTCCTCAACTTGCTGCACAACCTTTAAACTATCAGACATGGTTCTTGAAAGTTTCAATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAGCATTGATGGTGTTTTCACTGCAACAATAGACCCACAGCTGAACAAAGTAACAGTAACTGGAAGTGTTGCTGTGGAGACCCTTCTCAGGAAGCTCGTCAGAGCCGGAAAACAAGCCGAGATTTGGCCGGAGAATGACGGGAAAATCTCCGGCAATGGGCAGCAGCAGCAGAAGAAGAAGAAGAAAAATGAAGTTAGAGAACTACAGAGCGTGGAAAATCACAAGGGAACTGAAAATGCTTCTGTCAAGTGTAACAGTGAGAAAAAAAGCAGCAGCAATGACTCGCCGGGAAATTCCCCCTCCGTTTACCGGATGCCGTCGGAGGGTGGTCGGAGCGAAGGTGGTGCCGGCTCTGCTAAGAAGAAGAAGAAAAAATTGCACCTTGGTGGTGGGAATGGAAACAGTGGTTTGAGTTCAGTGGAAGCAGCTACTGGTGCACCTGCACACACTGGATTGCAGTTTCAAGATCTTGTGGGCCCAGTGAATGTGAACCCTACACGTCAGTATTGGCTTTTATATCCAGAAAGTGGTGTTGCAGCTTATAACAGATTGTATCCTTCTTACTACGTTCCATCTTCACCCTACACGTGGGCTGGTCTGGACCAAGATTGTCATCACTTTCAATCAGCACCGTTGGTGTCCTTTGAGATCTTCAGTGATGAAAATGTCAATGGGTGTTCTGTTATGTGA 804 0.4652 MAAKPPQLAAQPLNYQTWFLKVSIHCEGCRRKVKKVLKSIDGVFTATIDPQLNKVTVTGSVAVETLLRKLVRAGKQAEIWPENDGKISGNGQQQQKKKKKNEVRELQSVENHKGTENASVKCNSEKKSSSNDSPGNSPSVYRMPSEGGRSEGGAGSAKKKKKKLHLGGGNGNSGLSSVEAATGAPAHTGLQFQDLVGPVNVNPTRQYWLLYPESGVAAYNRLYPSYYVPSSPYTWAGLDQDCHHFQSAPLVSFEIFSDENVNGCSVM 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00142 267 Gene3D - 14 79 - -
Vian4g00142 267 MobiDBLite consensus disorder prediction 95 111 - -
Vian4g00142 267 CDD HMA 20 78 IPR006121 GO:0046872
Vian4g00142 267 ProSiteProfiles Heavy-metal-associated domain profile. 15 78 IPR006121 GO:0046872
Vian4g00142 267 SUPERFAMILY HMA, heavy metal-associated domain 14 81 IPR036163 GO:0046872
Vian4g00142 267 MobiDBLite consensus disorder prediction 112 140 - -
Vian4g00142 267 Pfam Heavy-metal-associated domain 22 73 IPR006121 GO:0046872
Vian4g00142 267 MobiDBLite consensus disorder prediction 81 179 - -
Vian4g00142 267 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 8 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00142 Vian-Chr4 1297244 1298530 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00142 - - vra:106761779 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00142 4 1297244 1298530 Vian4g00142 4 1297244 1298530 ECH
Vian1g00267 1 2364913 2367442 Vian4g00142 4 1297244 1298530 PCT