Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00117 ATGTCTAAGATGGTTGCGGAGGAGAAACCCCAAAAGACATACCCGACAACTGCTGAGGTAGTGGATGAGTTAAAGAGAATGGGGGACATAGGAGTTCCAATAGCAGCAATGAGCCTTGTCGGATACATCAAAAACATGGTGTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTTGAGTTAGCCGGTGGTGCTTTGGCCATAGGCTTCACCAACATAACTGGTTTCTCTGTCCTCTCAGGTTTAGCCATGGGAATGGAACCTCTTTGCACGCAAGCCTTTGGTTCAAGAAACTTGTGTTTGGTCTCTCTAACTTTACAAAGGACAATTTTCATGTTACTGGCAGCTTCACTGCCCATTTGTTTCCTGTGGCTGAAGCTGGAGCCTCTGATGCTATGGCTTCAGCAGAACCCTGAGATAACCAAAGTCGCAAGCATCTATTGCCGCTTCTCCATCCCAGACCTCATTGCCAACAGCTTCCTTCACCCAATTCGAATCTATTTACGTAGCAAAGGGACAACATGGCCTCTACTGTGGTGCACCTTGCTGTCCATTCTCATACACATCCCTGTCGTGACTTTTTTCACCTTCAAACTCCACCTTGGTGTACCCGGGATTGCTATGTCAGCTTTTGTTGCCAACTTCAACACCCTTTTCTTCCTCCTATCATACATGCTCTACATGCGCGTCTCAAAGGGGTCACTTTCCATGCCTTTATTAATATCTCGTCCCTTGTCATCACGACAACAAGACCAAAACTTAACCAGTCTTATCAGTTCCACAACAGTAACAACAACAACAACCTCGTTAGGCAAAGAGTGGGGCACACTGATAAGGTTTTCAATTCAGAGTTGCTTAGGAGTGTGCTTGGAATGGTGGTGGTACGAGTTCATGACAATTCTAGCAGGCTACCTTTACAATCCGCGAGTAGCCTTAGCCACCGCTGGCATAGTAATTCAAACCACGTCTCTTATGTACACTTTACCAACAGCACTGAGTGCTTCAGTGTCAACAAGAGTGGGGAATGAACTCGGGGCGGGTCAACCCGAGAGGGCAAGGTTGTCAACAATTGTGGCAGTAGGAATGGCTCTTGCAAGTTCAATATTGGGTTTGTTATGGACCACATTAGGGAGAGAGAGATGGGGGAGGGTTTTCACCAGTGATAGTGAGGTGTTGGAACTTACCATGAGTGTTTTACCCATAATTGGGATTTGTGAGTTAGCAAACTGTCCTCAAACCACAAGCTGTGGAATCCTTAGGGGAAGTGCTAGGCCTGGTGTTGGGGCAGGGATAAATTTCTATTCATTTTACTTGGTGGGGGCACCAGTGGCTATAGTGATGGCATTTTTTTGGAGACTAGGGTTGGTGGGTCTTTGCTATGGGCTGTTGGCAGCACAGATAGCATGTGTGGTCTCTATTCTAGTTGTGGTATACAACACAGATTGGGAAAGGGAGTCCTTGAAGGCAAAAAGCTTGGTGGGAAAGACTTCATGTGACACAACGGAACATGGAGACCAAACACTAGTCAAATGTGAAGAAGGTCTTGTCTTTCTCAATGAGAAGAACAGATCCCTAAAGTGA 1578 0.4632 MSKMVAEEKPQKTYPTTAEVVDELKRMGDIGVPIAAMSLVGYIKNMVLVVCMGRLGSLELAGGALAIGFTNITGFSVLSGLAMGMEPLCTQAFGSRNLCLVSLTLQRTIFMLLAASLPICFLWLKLEPLMLWLQQNPEITKVASIYCRFSIPDLIANSFLHPIRIYLRSKGTTWPLLWCTLLSILIHIPVVTFFTFKLHLGVPGIAMSAFVANFNTLFFLLSYMLYMRVSKGSLSMPLLISRPLSSRQQDQNLTSLISSTTVTTTTTSLGKEWGTLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPERARLSTIVAVGMALASSILGLLWTTLGRERWGRVFTSDSEVLELTMSVLPIIGICELANCPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAIVMAFFWRLGLVGLCYGLLAAQIACVVSILVVVYNTDWERESLKAKSLVGKTSCDTTEHGDQTLVKCEEGLVFLNEKNRSLK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00117 525 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 481 - -
Vian4g00117 525 Pfam MatE 284 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian4g00117 525 Pfam MatE 33 190 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian4g00117 525 CDD MATE_eukaryotic 23 487 IPR045069 GO:0042910|GO:1990961
Vian4g00117 525 NCBIfam MATE family efflux transporter 33 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00117 Vian-Chr4 1082877 1084622 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00117 K03327 - gmx:100785533 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00117 4 1082877 1084622 Vian4g00117 4 1082877 1084622 ECH
Vian1g00289 1 2567987 2569426 Vian4g00117 4 1082877 1084622 PCT