Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00289 ATGAGCCTTGTGGGGTACCTTAAAAACTTGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGTCTGGAGTTAGCTGGAGGCTCTTTGGCCATAGGTTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATTGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTTTAACTCTGCACAGAACAATTCTCATGTTACTTCTATTTTCCCTTCCCATTTCTCTTCTGTGGCTCAACCTCCAACCTCTCATGCTTTTCCTTCGTCAGAATCCAGACATAACCCGTGTAGCAACCCTCTATTGCCGCTTCGCTATCCCAGACCTCATAGCCAATAGTTTCCTCCACCCTCTTCGCATCTATCTACGCAGCAAAGGAACAACTTGGCCACTGCTGTGGTGCACTTTACTTTCCATTCTTCTACACCTTCCCACCATCACCTTTCTAACCTTCAAACTCCACCTTGGCGTGCCGGGAATCGCTGTTTCATCCTTCGTTGCCAATTTCAACAACCTTTTCTTCCTTCTTCTGTACATGTTCTATACACGCGTTCCCGAGGAGTCCTTACACGTGCCGTTACTACTGTCTCGTACCATGTCACATAATAATGTGATAACATGTGGTAGCAGTGGTAGTACTCTTGCCATGGAATGGGGTGTGCTAATGAAATTTTCAATACAAAGTTGTCTGGCTGTTTGCTTGGAATGGTGGTGGTACGAATTGATGACAATTTCCGCAGGCTACCTCAACAACCCTCGCGTTGCTCTAGCCACGGCTGGCATAGTGATACAAACCACATCTCTTTTGTACACTTTGCCAACAGCACTGAGTGCATCGGTGTCAACGAGAGTAGGGAATGAGCTTGGGGCGGGGCAAGCTGAAAGAGCGAGTTTAGCAACGGTGGTAGCGATTGGATTAGCACTAGCAAGCTCAATTTTTGGTTTATTGTGGACCACTATGGGAAGAGAAAAGTGGGGGAGAATGTTCACCAGTGATGGTGAGGTGCTGCAACTGAGTATGGCAGTGTTACCTATAATTGGAGTTTGTGAGTTAGCGAATTGTCCACAAACCACAAGCTGTGGAATCCTGAGAGGAAGTGCTAGGCCTGGTGTTGGGGCAGTGATAAACTTTTGCTCCTTTTATTTGGTGGGAGCACCGGTAGCCATTGTTTTGGCCTTCGTTTGGAAACTTGGGATGGTGGGGCTGTGTTATGGGTTGCTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCGTTGTGGTGTACAAAACTGACTGGGAAATGGAGTCATTGAAAGCCAGAAGCTTGGTGGGAAAGGGTGTGTGTGGAACTTTCGCATTTCATCAGGACCAGATTACGGTCAAATGTGAGGAACCTGTTGTCTTTCTCAAAGACAACAACTCAGAAAAGTGA 1440 0.4715 MSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAIGMEPLCTQAFGSRNFSLLSLTLHRTILMLLLFSLPISLLWLNLQPLMLFLRQNPDITRVATLYCRFAIPDLIANSFLHPLRIYLRSKGTTWPLLWCTLLSILLHLPTITFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMFYTRVPEESLHVPLLLSRTMSHNNVITCGSSGSTLAMEWGVLMKFSIQSCLAVCLEWWWYELMTISAGYLNNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQAERASLATVVAIGLALASSIFGLLWTTMGREKWGRMFTSDGEVLQLSMAVLPIIGVCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFVVVYKTDWEMESLKARSLVGKGVCGTFAFHQDQITVKCEEPVVFLKDNNSEK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00289 479 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 435 - -
Vian1g00289 479 Pfam MatE 8 154 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian1g00289 479 Pfam MatE 237 398 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian1g00289 479 CDD MATE_eukaryotic 1 441 IPR045069 GO:0042910|GO:1990961
Vian1g00289 479 NCBIfam MATE family efflux transporter 10 411 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00289 Vian-Chr1 2567987 2569426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00289 K03327 - gmx:100798616 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00289 1 2567987 2569426 Vian1g00289 1 2567987 2569426 ECH
Vian1g00289 1 2567987 2569426 Vian4g00117 4 1082877 1084622 PCT