Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00100 ATGTTTGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAGCGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGAGATGGTAGAACACTCAACACCATTGCATTCCAGAACGCCATCTTTTATCTCAAGTCATTTGCCGATAAGGGTGGCGCTCAGCTCTATGTTCCTCCCGGTAAATGGCTCACCGGAAGCTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTGTTGAACCCTTGCCTTCGTATGGCCGAGGCCTTGAAGTTCCCGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTTGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCCCATTCCTTGAACCATAGCCGTCCTCATCTGGTTGAAATTGTGGCATCTGATAATGTGGTGGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTCTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGAATATGTGTGTATAGAAGATTGTATTGTTGGCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCAACTGAGAATGTGCACATCAGAAGGGTGCATCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATGTTGTAGTGGAGCATGCTCATGTTATGAAATCAAACAGTGGCATTGAGTTTAGAACCACAAGAGGAAGAGGTGGTTATATGAAAGATATTGTTATATCAGACATAGAAATGGAAAATGTCCACACAGCAATTGCTGCCACTGGTAACTGTGGTTCTCATCCTGATGACAATTTTGATCCAAATGCACTCCCACTTTTGCATCACATCACATTGAGGGATGTCACAGGCACAAACATTAGCATTGCTGGAAACTTTGCTGGAATAGAGGAATCCCCTTTCACAAACATATGCCTTTCCAACATAACCTTGTCAACAAATTCTGTTTCTCCCATGACATGGGAATGCTCAAATGTGTCTGGATTTTCAGACTCAGTGCTCCCAGAACCTTGTCCTGAACTTGGAAACCCCTCATATGATTCTTCTTCCTCCTGTTTCTACCTTGTGAGTATCAGTGGAAAAACTGCAGTGCAGTGA 1359 0.44 MFVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGRTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDNVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPYTVGIVPDSSEYVCIEDCIVGMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVVVEHAHVMKSNSGIEFRTTRGRGGYMKDIVISDIEMENVHTAIAATGNCGSHPDDNFDPNALPLLHHITLRDVTGTNISIAGNFAGIEESPFTNICLSNITLSTNSVSPMTWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLVSISGKTAVQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00100 452 SMART pbh1 181 203 IPR006626 -
Vian4g00100 452 SMART pbh1 231 252 IPR006626 -
Vian4g00100 452 SMART pbh1 265 287 IPR006626 -
Vian4g00100 452 SMART pbh1 356 378 IPR006626 -
Vian4g00100 452 SMART pbh1 204 230 IPR006626 -
Vian4g00100 452 SMART pbh1 293 314 IPR006626 -
Vian4g00100 452 SMART pbh1 322 343 IPR006626 -
Vian4g00100 452 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Vian4g00100 452 Gene3D - 26 418 IPR012334 -
Vian4g00100 452 PANTHER PECTIN LYASE-RELATED 5 438 - -
Vian4g00100 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00100 Vian-Chr4 877972 880324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00100 3 428 Glycoside Hydrolase AT3G06770 64.352 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00100 - - gmx:100777503 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00100 4 877972 880324 Vian4g00100 4 877972 880324 ECH
Vian1g00307 1 2714662 2717103 Vian4g00100 4 877972 880324 PCT