Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00307 ATGCTAGTAGCATTACTCTTGCTGCTGTCGCTGAGCAATGAAGTCAGAGTCAATGGGCTGTGTGAGCATAATCCAGCACCAAAGCCAAGACCGCACACTGTGTCCATCCTGGAGTTTGGAGCGGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACGAGTCATCTGACACTGTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTACGGTCGAGGAGTTGAAGTTCCCGGGGGAAGATATCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAATAGTGGAATAATTGATGGCATGGGATTGGCATGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCCCATATTATTGAATTAGTGGCATCTGATCATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTTCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTTACAATGTTTCAATTTCTGCTCCTCCAGAATCCCCTTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGAAACGGGCTATGATGCAATTGCCCTGAAAAGTGGGTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATTTGCAAGCTTCTTCTGGGTCTACTGTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTTATCTTTACAATTCAAGGAGTGGCATTGAATTCAGAACTATGAGGGGTAGAGGTGGTTATATCAAGGAAATAGTCATATCAGAGGTAGAAATGGAGAATATATACACTGCAATGGCCGCCACAGGTTACTGTGGATCTCATCCTGATGACAAATTTGATCCAGATGCTCTTCCACTTTTGGACCACATTATTTTCCAAGATATGATTGGCACAAACATCACTGTTGCTGGAAGCTTTGCCGGTCTACAAGAATCTCCCTTCACAAATATATGCCTTTCCAATATAAATTTGTCTATAAATGCTGTTTCTTCCATTCCTTGGGAATGTTCAAATATCTTTGGATTTTCAAATTCTGTTCTTCCCAAACCCTGTCCTGATCTCGAGACCCTTTCGGATTGTCTCTCCCTTTTGAGTGTCAAGGGAAAAACTTCGGACATGTGA 1335 0.4202 MLVALLLLLSLSNEVRVNGLCEHNPAPKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFSSHSLNYSRPHIIELVASDHVVVSNLTFLNAPSYSIHPVYCSNVHIYNVSISAPPESPYTIGIVPDSSDHVCIEDCVIETGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTVAFGSDMSGGISNILVENVYLYNSRSGIEFRTMRGRGGYIKEIVISEVEMENIYTAMAATGYCGSHPDDKFDPDALPLLDHIIFQDMIGTNITVAGSFAGLQESPFTNICLSNINLSINAVSSIPWECSNIFGFSNSVLPKPCPDLETLSDCLSLLSVKGKTSDM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00307 444 PANTHER PECTIN LYASE-RELATED 9 426 - -
Vian1g00307 444 Pfam Glycosyl hydrolases family 28 131 410 IPR000743 GO:0004650|GO:0005975
Vian1g00307 444 SUPERFAMILY Pectin lyase-like 25 424 IPR011050 -
Vian1g00307 444 Gene3D - 12 414 IPR012334 -
Vian1g00307 444 SMART pbh1 262 284 IPR006626 -
Vian1g00307 444 SMART pbh1 290 311 IPR006626 -
Vian1g00307 444 SMART pbh1 228 249 IPR006626 -
Vian1g00307 444 SMART pbh1 178 200 IPR006626 -
Vian1g00307 444 SMART pbh1 201 227 IPR006626 -
Vian1g00307 444 Pfam Pectate lyase superfamily protein 34 91 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00307 Vian-Chr1 2714662 2717103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00307 30 437 Glycoside Hydrolase AT3G06770 63.480 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00307 - - gmx:100802343 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00307 1 2714662 2717103 Vian1g00307 1 2714662 2717103 ECH
Vian1g00307 1 2714662 2717103 Vian4g00100 4 877972 880324 PCT