Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00094 ATGGGTGTTTTTGCTCACGATGATGAGAACTCCTCTACACTGCCTCCAGCAATTTTGTACAAAGCTCTCACAAAAGATTCAGACATCATCATCCCAAAGGTTATTCCTGTCATCCAGAGCATTGAAATTGTTGAAGGAAATGGTGGACCTGGAACCATCAAGAAGCTAACAGCTCTTGAAGGTAGCGAAACGAGTTTTGTGCTGCAGAAAATCGATGCAGTGGACGAAGCTAACCTGGGATTTGATTACAGCATAGTGGGAGGACCAGGGTTGCATGAAAGTTTGGAGAAAATCACACTTCAGACAAAGGTTGTGCCTGGTCCTGATGGTGGTTCCATCTCCAAGGTCGCTGTCGAATACCACACCAAAGGCGATGCACCTCTCTTAGAGGCAGTGCTTGAAGAATCAAAGGCCAGGGGAACCGGTTTTTTCAAGGCTGTCGAGGGTTACGTTTTGGCAAACCCTGCAGAATACTAG 477 0.4654 MGVFAHDDENSSTLPPAILYKALTKDSDIIIPKVIPVIQSIEIVEGNGGPGTIKKLTALEGSETSFVLQKIDAVDEANLGFDYSIVGGPGLHESLEKITLQTKVVPGPDGGSISKVAVEYHTKGDAPLLEAVLEESKARGTGFFKAVEGYVLANPAEY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00094 158 PANTHER - 1 156 - -
Vian4g00094 158 Pfam Pathogenesis-related protein Bet v 1 family 12 153 IPR000916 GO:0006952
Vian4g00094 158 SUPERFAMILY Bet v1-like 9 156 - -
Vian4g00094 158 CDD Bet_v1-like 8 151 - -
Vian4g00094 158 Gene3D - 2 157 IPR023393 -
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian4g00094 158 FunFam Major pollen allergen Bet v 1-A 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00094 Vian-Chr4 857921 858654 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00094 - - gmx:100305867 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00094 4 857921 858654 Vian4g00094 4 857921 858654 ECH
Vian4g00094 4 857921 858654 Vian1g00309 1 2728812 2737086 PCT