Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00309 ATGGGTGTTTTCACTTCCGAAAGCGAACTCGTTTCTCCAGTCTCCGCTGCAAAATTGTTCAAAGCCATTGTCGTAGATGCCGCCAACGTCTTCCCAAAAGCATTACCAAACTTCATTAAGAGCGCAGAAACCATAGAAGGAGATGGAGGACCAGGAACCATTAAGAAGCTCACTCTTGCTGAAGAGACAGGTTTAGGGTTTGTGAAGCACCAGGTAGATGCAATAGACACAGAAAACTATGTGTACAACTACAGTGTGATCGAAGGAAGTGCATTGTCAGATACATTGGAGAAGATATCTTATGAGTACAAATTAGTGGGAACCGATGATGGAGGATCGATTGTGAAGTGCATGAGCAAATACTATACGAAAGGTGATGAGAAACTCGCTGAAGAATTTGTCAAGGCTGGTAAGGAGAGATCTGCGGCATTCACTAAGGCTATTCAGGATTTCATTCTGGCTAATCCTCAATTCAACATGGGAATCACAACCTACACACAGGAATATTCCTCCACTGTTGCCCCATCACGCATGTTCAAGGCCTTGATCGTAGACTCCAAGAATTTGCTTCCAAAGCTCTTACCTCAGTTTGTAAAAGATGTGAATGTAATCCAAGGTGATGGAGAAGCTGGAAGCATTGAACAAGTAAACTTCAATGAAGCTAGCCCCTTCAAATATCTGAAACACAGGATTGATGTGCTTGATAAGGAAAACTTGGTTTGCAAATACACTATGATTGAAGGGGATCCTTTAGGTGACAGACTTGAGTCTATAGGTTATGAGGTAAAGTTTGAGGCCACTAGTGATGGAGGTTGCCTCTGCAAAATGACTAGCAATTACAATACCATTGGAGAGTTTGATGTTAAAGAGGAAGAACTAAAGGAAGGAAGGGAGAGCACCATTGCAATTTACAAAGTTGTGGAGTCATACCTGCTGGAGAATCCACAAGTATATGCATAA 960 0.4208 MGVFTSESELVSPVSAAKLFKAIVVDAANVFPKALPNFIKSAETIEGDGGPGTIKKLTLAEETGLGFVKHQVDAIDTENYVYNYSVIEGSALSDTLEKISYEYKLVGTDDGGSIVKCMSKYYTKGDEKLAEEFVKAGKERSAAFTKAIQDFILANPQFNMGITTYTQEYSSTVAPSRMFKALIVDSKNLLPKLLPQFVKDVNVIQGDGEAGSIEQVNFNEASPFKYLKHRIDVLDKENLVCKYTMIEGDPLGDRLESIGYEVKFEATSDGGCLCKMTSNYNTIGEFDVKEEELKEGRESTIAIYKVVESYLLENPQVYA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00309 319 Gene3D - 159 319 IPR023393 -
Vian1g00309 319 SMART Bet_v_1_2 1 155 IPR000916 GO:0006952
Vian1g00309 319 SUPERFAMILY Bet v1-like 162 318 - -
Vian1g00309 319 CDD Bet_v1-like 164 311 - -
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 Gene3D - 2 158 IPR023393 -
Vian1g00309 319 SUPERFAMILY Bet v1-like 2 157 - -
Vian1g00309 319 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vian1g00309 319 Pfam Pathogenesis-related protein Bet v 1 family 160 313 IPR000916 GO:0006952
Vian1g00309 319 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vian1g00309 319 PANTHER - 160 317 - -
Vian1g00309 319 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Vian1g00309 319 CDD Bet_v1-like 4 148 - -
Vian1g00309 319 FunFam Major pollen allergen Bet v 1-A 160 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00309 Vian-Chr1 2728812 2737086 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00309 - - vun:114162549 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00309 1 2728812 2737086 Vian1g00309 1 2728812 2737086 ECH
Vian4g00094 4 857921 858654 Vian1g00309 1 2728812 2737086 PCT