Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00065 ATGAGTACTATGAAATTTTGCCGTGAATGTAACAACATTCTCTACCCTAAAGAAGACAGAGATCAGAAGATTCTTCTCTACGCTTGCCGCAACTGCGACCATCAGGAGGTTGCGGATAACTTCTGTGTATACAGGAATGAGATACATCATTCTGTTGGAGAGCGCACTCAAGTGTTGCAGGATGTAGCTGCAGATCCAACGCTTCCTCGGACCAAGTCTGTTCGCTGCACTCAGTGCAATCATGGTGAAGCTGTCTTTTTCCAGGTCATATTGCAAGATTCTGATTTAGTTCCACATTGGATGGGTATCCCCTTCTTCCTTGTGTGTGTGTACATGGAGCGATGTGGAGGTAGAGCTGTGAAGATTTGA 369 0.4526 MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCTQCNHGEAVFFQVILQDSDLVPHWMGIPFFLVCVYMERCGGRAVKI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00065 122 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Vian4g00065 122 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Vian4g00065 122 PANTHER DNA-DIRECTED RNA POLYMERASE 1 110 IPR012164 GO:0003899|GO:0006351
Vian4g00065 122 FunFam DNA-directed RNA polymerase II subunit RPB9 1 46 - -
Vian4g00065 122 Gene3D - 47 118 - -
Vian4g00065 122 Gene3D - 1 46 - -
Vian4g00065 122 SUPERFAMILY Zinc beta-ribbon 51 93 - -
Vian4g00065 122 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Vian4g00065 122 Pfam RNA polymerases M/15 Kd subunit 4 39 IPR001529 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00065 Vian-Chr4 595814 596696 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00065 K03017 - gmx:100305979 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00065 4 595814 596696 Vian4g00065 4 595814 596696 ECH
Vian1g00333 1 2977545 2980738 Vian4g00065 4 595814 596696 PCT