LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g00333	ATGAGTACACTGAGATTTTGCGGTGGATGCAACAATGTTCTATACCCTACAGAGGACAAGGAAAACAAGGTTCTTCTCCACACTTGCCGCTACTGCAATCATGAGGAGCGTGCAGATACTAACGTTGTCTATAGAAATAAGTTACATCACTCTGTTCAAAGGCGCACTCGAGAGCTGGAAAATGTAGCTGCAGATCCAACACTTCCTCGCACCAAGTCTATTCGCTGCTCTCAATGCAACCATGGAGAAGCTGTCTTTTTCAAGGCAACGGCCAAAGGGGAAGAAGGCTCGGCACTCAATTTTGTTTGCTGCAACCCAACTTGTGGCAACCGTTGGAGAGAGTAG	345	0.4696	MSTLRFCGGCNNVLYPTEDKENKVLLHTCRYCNHEERADTNVVYRNKLHHSVQRRTRELENVAADPTLPRTKSIRCSQCNHGEAVFFKATAKGEEGSALNFVCCNPTCGNRWRE	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g00333	114	CDD	Zn-ribbon_RPB9	64	113	IPR034012	GO:0006379
	Vian1g00333	114	ProSiteProfiles	Zinc finger TFIIS-type profile.	72	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Vian1g00333	114	Pfam	RNA polymerases M/15 Kd subunit	4	40	IPR001529	GO:0006351
	Vian1g00333	114	Pfam	Transcription factor S-II (TFIIS)	74	113	IPR001222	GO:0003676\|GO:0006351\|GO:0008270
	Vian1g00333	114	SUPERFAMILY	Zinc beta-ribbon	1	48	-	-
	Vian1g00333	114	SMART	rpol9cneu	5	58	IPR001529	GO:0006351
	Vian1g00333	114	FunFam	DNA-directed RNA polymerase II subunit RPB9	1	46	-	-
	Vian1g00333	114	SUPERFAMILY	Zinc beta-ribbon	55	114	-	-
	Vian1g00333	114	FunFam	DNA-directed RNA polymerase subunit	47	114	-	-
	Vian1g00333	114	Gene3D	-	1	46	-	-
	Vian1g00333	114	PANTHER	DNA-DIRECTED RNA POLYMERASE	1	114	IPR012164	GO:0003899\|GO:0006351
	Vian1g00333	114	Gene3D	-	47	114	-	-
	Vian1g00333	114	ProSitePatterns	RNA polymerases M / 15 Kd subunits signature.	6	32	IPR019761	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g00333	Vian-Chr1	2977545	2980738	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g00333	K03017		-	gmx:100806190	209.534

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g00333	1	2977545	2980738	Vian1g00333	1	2977545	2980738	ECH
	Vian1g00333	1	2977545	2980738	Vian4g00065	4	595814	596696	PCT