Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02645 ATGAATGCTGTTGCCATTAGCCGCAATTTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAACGAGGAGAAAAAGGTATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCGTTATTGGCCCCCATAATACTGTACATGAAGGAAGAATCTATCAACTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGATTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAAATGGAGTGGTTGAACCAAAGAAGTTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGACATACTGACCCAGCTGAAGAAGGAAATGGCAGCTCCTCATAACCGGAAGCTTGTCCAGCCCCCAGAAGGTACCTACTTTTAG 435 0.4437 MNAVAISRNFPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHENGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02645 144 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Vian3g02645 144 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 44 132 - -
Vian3g02645 144 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 2 144 - -
Vian3g02645 144 SUPERFAMILY UBC-like 10 144 IPR016135 -
Vian3g02645 144 SMART ubc_7 14 142 - -
Vian3g02645 144 Pfam Ubiquitin-conjugating enzyme 41 134 IPR000608 -
Vian3g02645 144 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 144 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02645 Vian-Chr3 41061445 41062711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02645 K10704 - rcu:8271115 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02645 3 41061445 41062711 Vian3g02645 3 41061445 41062711 ECH
Vian2g02534 2 45997482 46001017 Vian3g02645 3 41061445 41062711 PCT