Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02534 ATGACGCTTGGCTCTGCGGGATCCAGTGTCGTGGTTCCGAGGAACTTCAGATTGCTGGAGGAACTTGAAAAGGGAGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGATATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCTATAATACTGTACACGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGATTACCCAGAAAAGCCTCCAACTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTAGTCTTCTTGCAAATTGGCAACGAAGGTTTACCATGGAAGATATATTGACCCAATTGAAGAAGGAAATGGCAGCTTCACATAACCGCAAGCTTATCCAGCCTCCTGAAGGTACTTGCTATTAG 441 0.4172 MTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVVESKKFSLLANWQRRFTMEDILTQLKKEMAASHNRKLIQPPEGTCY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02534 146 Pfam Ubiquitin-conjugating enzyme 43 132 IPR000608 -
Vian2g02534 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Vian2g02534 146 SMART ubc_7 16 144 - -
Vian2g02534 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Vian2g02534 146 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 4 146 - -
Vian2g02534 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 46 133 - -
Vian2g02534 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02534 Vian-Chr2 45997482 46001017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02534 K10704 - gmx:100789495 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02534 2 45997482 46001017 Vian2g02534 2 45997482 46001017 ECH
Vian2g02534 2 45997482 46001017 Vian3g02645 3 41061445 41062711 PCT