Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02576 ATGCTTCAGTTTCGGTTAAAACCAGTAACGGCATTCGCGGCGAAGCCGTCACCGTTGGTGGCTTTCGTCACGGTAATCGTCATTGGAGTGGTGGGGTTTTATTCCCTACATTTCCCTTTCCGTTCCGCGACTTCCCTCGACGCTTCGCGCTTCGGCCACGTGTTCCTCTCGTCCTCCTCCAACGCAACGATCTCCAACTACCTTCGCGGGCTCACCGTGCACCCTCACCTCGCGGGAACAAAACCCGCTTCCCTAACCGCGCGCTACGTGCTCAACCACTTCACCGGCCTCGGGCTCCGAACCAGGACCGCTAAGCACCGCGTGCTATTGTCCTACCCGCTGCGCTCCTCTCTCTCGGCTCATTTTGGTGACGGTTCGAGTTTGGAGTTTCAGTTGGGGGAGGGAGAGGGGGACGGGGAGGTGGTGGCGCCGTACCACGCGTACTCGCCGTCGGGGTCGGCGTGGGCTGCGGCGGTGTTCGTGAACTACGGGCGGGAGGAGGACTTCCGGTTGCTGGCGGCGGCGGGGGTGAGGGTGGCGGGGTGCGTTGCGGTGGCGAGGAGCGGCGGGGGAGTGGGGCGTGGGGCGGTGGTGGAGGCGGCCGAGAGGCATGGTGCGGCGGCGGCGGTGGTGTTCAGGGAGGGGGACACGTGGCCCCGAGGTTTTGAGAGGGGACACGTGATGAGAGGGGGGATTGGGGACCCGCTGAGTCCTGGGTGGGGTGGGGTGGATGGCGGCGAGAGTTTGGGTTTGGATGATAGTGAGGTTTTGAGAAGATTTCCTAAAATTCCATCCATGCCTTTGTCTTCTGAGGCTGCTGAGAGGATCTTGGTCTCGCTTGGTGGAGCTCCTCTGCCCTCGGATTGGACGGGTACCCTAAAGTCCTCCAAGGTTACGAATGTTGGTCCTGGCCCCACCATCCTCAACTTCACTTATCAGGGAGAAATGAAAGTGGCTACCATTGAAAACGTTTTTGCCATTATCAAGGGACGGGAAGAATCTGATCGCTATGTTCTGCTTGGGAACCATAGAGATGCATGGACATATGGTGCTGTTGACCCCAACAGTGGGTCAGCTGCCCTACTTGACATTGCTCGTAGATATGCTATTCTATTGCGTTTGGGGTGGACTCCACGGAGGACCATCATTCTATGCAGTTGGGATGCAGAGGAATTTGGAATGGTAGGATCCACAGAGTGGGTTGAACAAAACCTTGTTAATCTTCGTTCCAAAGCTGTAGCATACCTTAATGTAGACTGTGCTGTTCAAGGGCCTGGTTTTTTTGCTGGCTCAACTCCTCAGCTAGATGATCTCCTTCTCGATATCATCAAAAAGGTCAAGGATCCTGACACTGATGAGGGTACAACAATATATCAGAATTGGGCAGCTGGTGGTGGAAAATCTAATATTCAAAGGCTGGGTAGAGTTGATTCTGATTTTGCTCCATTTGTGCAACATGCAGGGGTTCCATCTATTGATATATATTATGGAAAAGATTATCCTGTTTATCATACTGCTTTCGACTCCTACAACTGGATGACAGAGTTTGGAGATCCATTCTTTCAGCGCCATGTAGCTGTTACTGGAATTTGGGGGCTTCTAGCCCTTCGCCTTGCTGATGATTCCATTATACCTTTCAATTATGTGTCTTATGCGGATCAGTTACAGGTGTACAATGACATATTGAGCAACTTGTTAGACAAGCAAATTTCTCTACATCCACTAACTGCGTCGATTCAAGAATTTGCTTCTGCTGCCAAAGAAGCTAATGAGGAATCAAAGAAACTGAGACTGCAAGAAAACTCAGATCATTTTGTGGATATGAAGATACGAGCATTGAATGATAGACTGATGCTTACGGAAAAAGGTTTCTTGGATGTTGACGGGCTTCGAGGAAGACAATGGTTCAAGCATCTTGTTTTTGGGCCTCCCAGAGACCAAGAAAGCAAGTTGGATTTCTTCCCTGGAATAGCTGACTCTATGTCTGAGATGTTTAAAATGAGTGAAAAAGAAAGGCTGGCAGCAATTCAGCATGAGCTTTGGAGGGTGGCCAGGGCTATTCAAAGAGCTGCTTCAGCACTAGGAGGAGATTTGGCCTAA 2100 0.5162 MLQFRLKPVTAFAAKPSPLVAFVTVIVIGVVGFYSLHFPFRSATSLDASRFGHVFLSSSSNATISNYLRGLTVHPHLAGTKPASLTARYVLNHFTGLGLRTRTAKHRVLLSYPLRSSLSAHFGDGSSLEFQLGEGEGDGEVVAPYHAYSPSGSAWAAAVFVNYGREEDFRLLAAAGVRVAGCVAVARSGGGVGRGAVVEAAERHGAAAAVVFREGDTWPRGFERGHVMRGGIGDPLSPGWGGVDGGESLGLDDSEVLRRFPKIPSMPLSSEAAERILVSLGGAPLPSDWTGTLKSSKVTNVGPGPTILNFTYQGEMKVATIENVFAIIKGREESDRYVLLGNHRDAWTYGAVDPNSGSAALLDIARRYAILLRLGWTPRRTIILCSWDAEEFGMVGSTEWVEQNLVNLRSKAVAYLNVDCAVQGPGFFAGSTPQLDDLLLDIIKKVKDPDTDEGTTIYQNWAAGGGKSNIQRLGRVDSDFAPFVQHAGVPSIDIYYGKDYPVYHTAFDSYNWMTEFGDPFFQRHVAVTGIWGLLALRLADDSIIPFNYVSYADQLQVYNDILSNLLDKQISLHPLTASIQEFASAAKEANEESKKLRLQENSDHFVDMKIRALNDRLMLTEKGFLDVDGLRGRQWFKHLVFGPPRDQESKLDFFPGIADSMSEMFKMSEKERLAAIQHELWRVARAIQRAASALGGDLA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02576 699 Pfam Peptidase family M28 323 511 IPR007484 -
Vian3g02576 699 SUPERFAMILY Transferrin receptor-like dimerisation domain 545 696 IPR036757 -
Vian3g02576 699 Gene3D - 549 699 IPR036757 -
Vian3g02576 699 CDD M28_PSMA_like 319 546 - -
Vian3g02576 699 Pfam Transferrin receptor-like dimerisation domain 570 694 IPR007365 -
Vian3g02576 699 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 546 696 - -
Vian3g02576 699 SUPERFAMILY Zn-dependent exopeptidases 62 542 - -
Vian3g02576 699 SUPERFAMILY PA domain 108 325 IPR046450 -
Vian3g02576 699 Gene3D - 116 314 - -
Vian3g02576 699 Gene3D Zn peptidases 62 545 - -
Vian3g02576 699 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 23 696 IPR039373 -
Vian3g02576 699 FunFam Os01g0740650 protein 314 545 - -
Vian3g02576 699 Coils Coil 579 599 - -
Vian3g02576 699 Pfam PA domain 139 223 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02576 Vian-Chr3 40047431 40063154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02576 K01301 - gmx:100817485 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02576 3 40047431 40063154 Vian3g02576 3 40047431 40063154 ECH
Vian2g02952 2 50187691 50191674 Vian3g02576 3 40047431 40063154 PCT