Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02572 ATGTTGGGGAATGTTATTTCCTTGAACTTTCATAAGCGTAGCTTTGTGCCTCATAAAGTTGTGGCCTACTCCATCATAACAAGCATTCATGATTACAAGCCTTTGATCTCCTTCTCTTCTCAGCACCAGCACAACCTCTTACAGGATCTTTCACCAGATGAACATACCGGAATGGTGAATGAATTGAGCAGAAGTGTTGATTTCGAGAAGTTCTCATGGAAAATTGAGGATTTCTCTAAACAAAATATCATGAAACTGCGCTCCAAGCCTTTCAAAATCCGTGGCTGTACATGGAGGATCCTTGTGCATCCATTGAGGAGTGATGTCAACCATTTTTCAGTGTATTTGATGGTTGCTGATTCTTTACCTCCGTACGGATGGACCAGACACACGGTTTTCAAGCTGGTTCTGATCAACCAAGTGGACAACAGCAAAACAATTGAAAAAGAGACCAAACAGAAGTTCAATGGAGGACATCGTTGCTGGGGTTCATTTTTCGTGAATCTAAGTGATTTCTACAACCATAACAAAGGATATCTTGTGAAGAACAGCTGCATCATTGAGGCACACATCTGCCTCTCGGATTTAGCACCCAATATTCAGGTTCACCCAAATTGTTCTCCATATCATGACTCTTCTTCATCAGGTGGTCAAGCAACAGAAACATCCTCGGATAGGGACAGCATTAGTCCGAGAACCTCAGGATCTAGTGCAGCAGAAGGGGAAACTCAAAAGGGTTGTTCAAACAGTTTGACACTGAGAGAACTCATAGATTTGAAGAGTTTAGCAGGAGAAGGAGAAGCCTTCATTCCACTTCTGGAAGAGGCTTGCACATGGCATCCAAACCTTATACAGTGCCAGAAGGAGAGAACTCGCGGATTCAGACAATGGGCATTCACATCATTAGGCCAAGTTCTTCACTTTCTCAAGACCAAAAGGGTTAAAGATATGAGTGAAGAAGACATAAAGCATCTTCGTGATTTGTGGAAGGAACTTGTGAAATCTTCAGGGTTTGATTTGGAATGGCTGGAACCATATGTTGAATCAGCATTGGGTTTGAAAGCTTACATGGAAAAAGCAAAGCGGTTGAAGAAAGTGAAGGACACAGTGGTTGGTTTGGAGATCAAGATGAAGAGACTGAGAGGGGAACTTGCTGCTGCTGAAAGATTGTTTGAGGTTTCAAGAAGAGAGTTATCAGAAGTAAGAAGAGGTTTCAATGAGATGGATATGAACTCTACAATTGGATATGCTATGTTTTAG 1260 0.419 MLGNVISLNFHKRSFVPHKVVAYSIITSIHDYKPLISFSSQHQHNLLQDLSPDEHTGMVNELSRSVDFEKFSWKIEDFSKQNIMKLRSKPFKIRGCTWRILVHPLRSDVNHFSVYLMVADSLPPYGWTRHTVFKLVLINQVDNSKTIEKETKQKFNGGHRCWGSFFVNLSDFYNHNKGYLVKNSCIIEAHICLSDLAPNIQVHPNCSPYHDSSSSGGQATETSSDRDSISPRTSGSSAAEGETQKGCSNSLTLRELIDLKSLAGEGEAFIPLLEEACTWHPNLIQCQKERTRGFRQWAFTSLGQVLHFLKTKRVKDMSEEDIKHLRDLWKELVKSSGFDLEWLEPYVESALGLKAYMEKAKRLKKVKDTVVGLEIKMKRLRGELAAAERLFEVSRRELSEVRRGFNEMDMNSTIGYAMF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02572 419 ProSiteProfiles MATH/TRAF domain profile. 68 191 IPR002083 GO:0005515
Vian3g02572 419 SMART math_3 70 172 IPR002083 GO:0005515
Vian3g02572 419 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 67 203 IPR008974 GO:0005515
Vian3g02572 419 Pfam MATH domain 76 191 IPR002083 GO:0005515
Vian3g02572 419 CDD MATH 70 191 IPR002083 GO:0005515
Vian3g02572 419 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 68 390 - -
Vian3g02572 419 MobiDBLite consensus disorder prediction 208 246 - -
Vian3g02572 419 Coils Coil 363 397 - -
Vian3g02572 419 SUPERFAMILY TRAF domain-like 70 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02572 Vian-Chr3 39980464 39982536 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02572 - - vum:124839300 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02572 3 39980464 39982536 Vian2g02950 2 50179827 50181296 PCT