Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02950 ATGTCGCTAGCCACTAGAATGGACAGCCAGAGGGAAACCAGTATTTTTTTTGAGACATTCACGTGGAAGATTCAGAATTTCTCAAAACAAAACACCAAGAAACTACAATCCAAGGCCTTCCGAATCCGAGGTTATAAATGGCGTATTCGTGTGTATCCATTAATGAGAAATGTCGACCATTTTTCGTTATATCTGATGGTTGCGGATTCTTTACCACCCTACGGATGGAACAGAAACACATATTTCAAGTTATCTCTGGTTAATCAATTGGATGGGAATAAGTCGGTTGTAAAGGAGACTCAGCAGAAGTTCAATGGCGGATATCGTAGCTGGGGCTCATTTTTCGTGAACCGAAGTGTCTTCTTTGACTCAAAGCAAGGGTATCTTGTGAACGACACATGCATCATTGAAGCTCATGTTTGTGTCTCCGATTTTAGTACAATCGAAGTTAACAAGTTGAACACAATCTGTGCAACTTCCAACGCTAAGTTAGGTGATGAAGCAAGAAGAAATTCAGAATCCACACAGCAGGAAGATGATAAAGAAACAGAAACAGAAACATCAGATGAGTGTGAGACGCTTAGTTCAAGCAGCTGTGGATCTAGTCAAACAGAAGGGGAAGTTAAAAGTTCGGATTTGACGCTAAAAGACCTTCTAGATTTGGCGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTTATAAGAAGCCAGAGGAAAAGTTCAAGATGGTTCAAACTATGGGCATTCACATCCTTAGGTCAAGTTCTATACTTACTAAAGACAAGTAAGGCAAAGGATATGAATGAAGATGCATGCAATCGTCTTCATGGTTTATGGGAGGAACTTGTAAAACATTCGGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTCAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAGACAGAAGAGGTCAACAAACTGAAAGACAGTGTTGTCACTTTGGAGATCAAAATGAAGAAGCTGAGGGGAGAATTGGCAGCTGCTGAAGCTGAGTTTGAGGTAACAAGGAGGGCATTAGTTGAGGCCAGAAAAGGTTTCATAGAGTTGGATTTTAATACTGAATTAGGTTATGCTATGTTTTAG 1146 0.4058 MSLATRMDSQRETSIFFETFTWKIQNFSKQNTKKLQSKAFRIRGYKWRIRVYPLMRNVDHFSLYLMVADSLPPYGWNRNTYFKLSLVNQLDGNKSVVKETQQKFNGGYRSWGSFFVNRSVFFDSKQGYLVNDTCIIEAHVCVSDFSTIEVNKLNTICATSNAKLGDEARRNSESTQQEDDKETETETSDECETLSSSSCGSSQTEGEVKSSDLTLKDLLDLASLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLYLLKTSKAKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVQSALGMKAHLEKTEEVNKLKDSVVTLEIKMKKLRGELAAAEAEFEVTRRALVEARKGFIELDFNTELGYAMF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02950 381 CDD MATH 19 140 IPR002083 GO:0005515
Vian2g02950 381 Coils Coil 325 359 - -
Vian2g02950 381 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 163 IPR008974 GO:0005515
Vian2g02950 381 MobiDBLite consensus disorder prediction 190 206 - -
Vian2g02950 381 Pfam MATH domain 24 141 IPR002083 GO:0005515
Vian2g02950 381 SMART math_3 19 121 IPR002083 GO:0005515
Vian2g02950 381 MobiDBLite consensus disorder prediction 167 206 - -
Vian2g02950 381 ProSiteProfiles MATH/TRAF domain profile. 17 140 IPR002083 GO:0005515
Vian2g02950 381 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 353 - -
Vian2g02950 381 SUPERFAMILY TRAF domain-like 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02950 Vian-Chr2 50179827 50181296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02950 - - gmx:102664376 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02950 2 50179827 50181296 Vian2g02950 2 50179827 50181296 ECH
Vian2g02950 2 50179827 50181296 Vian7g01427 7 22809103 22821045 ECH
Vian3g02572 3 39980464 39982536 Vian2g02950 2 50179827 50181296 PCT