Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02527 ATGGGAGGTGGTGGCCGAAGCTCTGCTCCAAAACAGAGAAACTCCGGTGAAGATGTGGTTTGGAAGAAGCGCGTTCCACACGAAAAACCACCGTTCAGTCTGAGCAAAGTGAAGAAAGCGATTCCGCCGCACTGTTTCGAGCGTTCGGTGGTTCGTTCCTTCTCCTACGTCTTCTACGACCTGGCCATAGCCTCGTGTCTTCTCTACGTGGCGCTAAACTACTTCTCAACCCTTCCCCATAACCTCTCCCTCTTGGCCTGGCCCCTATACTGGATCCTTCAAGGTTCCATCCTCACCGGTGTTTGGGTCATAGCGCACGAGTGTGGCCACCACGCTTTCAGCGATTACCAGTGGCTCGATGACACGGTTGGTCTCGTTCTCCATTCGTTTCTTCTCGTGCCCTATTTTTCCTGGAAATATAGCCACCGCCGCCACCACTCCAACACGGGGTCCCTCGAACGCGACGAAGTGTTTGTGCCGAAAACAAAGTCCAGCGTTGGTTGGCATTCTAAGTACCTCAACAACCCTGCTGGGAGAGTTCTCACTCTTGCCATCACCCTAACCCTAGGTTGGCCTCTCTACTTGGCCTTCAACGTTTCGGGTCGGAGCTACGAGCGTTTCGCCTGCCACTATGACCCTTATGGCCCCATTTACTCCGACCGCGAAAGGCTTCAGATTTACGTCTCCGATGTAGGGGTTCTGGCCGTGTGTTACGGCCTCTACAAGTTTGTGTTGGCAAAAGGGTTCCTTTGGGTGGTTTGTGTCTATGGGGTGCCTCTGATGGTGGTAAATGCGTTGTTGGTGTTGATCACTTTCTTGCAGCACACTCACCCTGCGGTTCCTCACTACGATTCCGCGGAGTGGGATTGGCTGAGAGGCGCATTGGCCACCGTGGACAGAGATTACGGGATTCTGAACAAGGTTCTTCATAACATCACTGACACACACGTGGCACATCACTTGTTCTCCACGATGCCGCATTACCATGCAATGGAAGCCACCAAAGCTATAAAACCAATTCTGGGAGATTATTATCACTTTGATGGCACTCCTATCTATAAGGCAATGTGGAGAGAGGCAAGAGAGTGCATGTACGTTGAGACTGATGAAAAGTCTAAGAACAGTGGTGTTTACTGGTACAACAATCAACTGGATTGA 1158 0.5147 MGGGGRSSAPKQRNSGEDVVWKKRVPHEKPPFSLSKVKKAIPPHCFERSVVRSFSYVFYDLAIASCLLYVALNYFSTLPHNLSLLAWPLYWILQGSILTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKTKSSVGWHSKYLNNPAGRVLTLAITLTLGWPLYLAFNVSGRSYERFACHYDPYGPIYSDRERLQIYVSDVGVLAVCYGLYKFVLAKGFLWVVCVYGVPLMVVNALLVLITFLQHTHPAVPHYDSAEWDWLRGALATVDRDYGILNKVLHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYHFDGTPIYKAMWREARECMYVETDEKSKNSGVYWYNNQLD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02527 385 CDD Delta12-FADS-like 48 330 - -
Vian3g02527 385 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 9 383 IPR012171 GO:0016491
Vian3g02527 385 Pfam Domain of unknown function (DUF3474) 26 65 IPR021863 GO:0016717
Vian3g02527 385 Pfam Fatty acid desaturase 86 346 IPR005804 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02527 Vian-Chr3 39367536 39368693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02527 1 384 Lipid Metabolism Gene Families AT3G12120 73.177 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02527 K10256 - gmx:100780912 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02527 3 39367536 39368693 Vian3g02527 3 39367536 39368693 ECH
Vian2g02010 2 39743597 39744748 Vian3g02527 3 39367536 39368693 PCT