Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02458 ATGAAATGCTTTCCCGAGTTGGCTACTGTTGATTTGTTTGCAGCGATAGCGCTCAAAGGTGGTATTATTGCCCTTGGTTTACAGTATCAGCCTAATTGGAGAACTGGGAAGCCTGGGACAGGAATAGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCTCTGCCCAAATCTGATCATGGGAAATTCTACATGGGAGATTCTTATATCATCTTGCAGACAACTCAAGGCAAAGGTGGCACTTATTTTTATGATTTGCATTTCTGGATTGGAAAAGATACAAGTCAGGATGAGGCTGGAACTGCAGCCATTAAAACCGTTGAACTAGATGCTGCTCTTGGAGGGCGTGCAGTGCAGCACAGGGAAATCCAAGGACATGAATCTGACAAGTTTTTGTCATACTTTAAACCATGTATAATACCATTAGCGGGTGGTGTGGTATCTGGGTTTACAAAACCTGAAGAAGAGGAATTTGAAACACGTTTATATGTATGCAAAGGGAAAAGAGTTGTTAGATTGAGACAGATCCCTTTTGCAAGGTCTTCATTGAATCATGATGATGTATTCATAGTCGACACTGAGAATAAGATATTCCAGTTCAATGGTGCAAATTCCAATATTCAGGAAAGAGCCAAATCTTTGGAAGTTATACAATTCCTTAAAGAAAAATATCATAAAGGGAAATGTGATGTTGCAATTGTTGATGATGGTAAGTTAGACACAGAGTCTGACTCAGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGGTAATCAGTGAGGATGATGTTATTCCAGAGTCAATTCCTGCTCAGCTTTATAGTATTGCTAATGGTGAGGTTACCCCCGTGGAAGGTGAACTGTCTAAATCATTGTTGGAAAACAACAAATGCTATCTATTGGACTGTGGTGCTGAGATATTTGTCTGGGTTGGTCGGGTAACTCAAGTAGAAGAACGAAAAGCAGCCTGCCAAGCCGCTGAGGAGTTTGTTGCAAGCCAAAATAGGCCAAAATCTACAAGGATAACCAGGATTATTCAAGGTTACGAGACGCATTCATTTAAGTCCAACTTTGATTCTTGGCCATCTGGGTCTGCTAATACCAATGCAGAGGAAGGAAGAGGGAAAGTTGCAGCACTGCTTAAGCAACAAGGTATGGGTGTCAAAGGAATGGCCAAAAGTACCCCAGTAAATGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGGAAGATAGAGGTATGGCGAATTAGTGGAGATGCCAAGACCGCATTGCCAAAGGAGGAGATTGGTAAATTCTATAGTGGAGATTGTTATATTGTACTGTACACATACCATACCGGTGAGAGGAAAGAAGACTTCTTCTTGTGCTGTTGGTTTGGTAAAGACAGCATCGAGGAGGACCAAACAACTGCTACTCGGTTGGCCAATACAATGTGTACCTCATTAAAGGGTAGACCTGTACAGGGTCGCATATTTGAAGGCAAAGAGCCACCACAATTTGTTGCTATTTTCCAACCAATGGTGGTACTTAAGGGAGGATTGAGCTCCGGGTACAAGAAATTATTAGCAGACAAAGGTGCATCAGATGAGACATACACAGCAGAGTGTATTGCACTTATTCGAATCTGTGGAACTTCTGTTCATAACAATAAATCTTTACAAGTTGATGCGGTGCCAGCATCGTTGAATTCTGCTGAGAGTTTTGTCCTGCAGTCTGGCTCTACAGTTTTTATCTGGCATGGGAATCAGTGTTCTTTTGAGCAGCAACAGCTAGCAGCAAAGGTTGCTGAATTTTTAAGGCCTGGAGTTACTCTAAAGCATGCTAAAGAAGGAACAGAAAGCTCAGCTTTCTGGTCTGCACTAGGAGGAAAACAAGCTTACACAAGCAAGAAAGTTGTTAACGAAGTTGTCAGAGATCCACATTTGTTCACCATATCATTTTATAAAGGAAAGTTCAAGGTAGAGGAGGTTTACAACTTTTCTCAAGATGACCTGCTAACAGAGGATATCCTTGTACTTGACACACACGCAGAAGTGTTTATTTGGGTCGGTCATTCTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGGCCAGAAATACTTAGATATGGCTGCATCTCTGGAGGGACTATCTCCACACGTACCAGTATATAAAGTAACAGAGGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTGTGGTTCAGGGGAACTCATTTCAGAAAAAGGTGGCGATACTCTTTGGGATTGGCCATGCTGTCGAGGATAAGTCAAATGGGTCAAGTCTGGGGGGACCAAGACAAAGAGCTGAAGCATTGGCTGCTTTGAACAATGCATTTAGTTCATCATCTGAGAAATCATCCAGTATGACACAAGATAGATTAAATGGGTTAAGCCAAGGAGGACCAAGACAAAGGGCAGAAGCTTTAGCTGCTTTGAACTCTGCATTTAATTCATCATCTGGGACAAAACCTGTAACTCCTCCTAAGGCATCTGGAAAAGGTCAAGGATCACAAAGAGCAGCAGCAGTGGCTGCTCTTTCACAAGTTCTGACTGCTGAAAAGAAGAAAGTATCACCTGATGGTTCTCCTGTGGCTAGTAGTAGTCCTCTCAATGAAAATAGCCCCACTGTTCTTGCTGCAGAAGCTAAAAGTGAATCCTCTGAAGTTGAAGAAGTTGCAGAGGCCAAGGAAACAACAGAGGAACTTGCCCCTGAAACTGCTAGCAATGAGGATATGGAACCAAAACAAGAAACCGAGGAGGAGTCGAATGGTAGTCAAAGGACGTTTACTTATGAACAATTAAAGACTAGATCTGGTATTGATGTGGCTGGAATTGATCTTAAACGGAGGGAGGCCTATCTATCGGAGGAGGACTTCAACACTATATTTGGAATGGAAAAAGACGCATTTTATAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAAGAAATTCGAATTGGTTTTATTGGGTATATACCATAGTTTGGGTTCATATGATAGCGTTTTGCTTTCGGCCTATATGATGGACGTAGCTGTGGTTAGAACGGGAGCTGACGGGCAAGGAGAAAAGGACCCCCCATCGCCGATCCCAGCATCAGCCTTTCAGAATCCACTTTCTGAGATATCGCCGTCACCGTCGCCGTCCTCATCGACAGCTCCGGCGCTGGTGCTTTCGAACTCGGGGAAGCGCATCGACCAGACGGGGAGGAAGAAGTACGTGAAGCAAGTGACGGGGCGGCATAACGACACGGAGCTGCACCTGGCGGCACAGAGGGGCGACGTCGGCGCCGTGAGACAGATCCTTCTCGACGTCGAATCTCAGGTTATGGGAACTCTCGGCGACGGCGACGACGACGATCTCGACATCGAGATTGCGGAAGTGCGAGCTTGCCTCGTCAACGAAGAGAACGAGCTCGGTGAGACCCCTTTGTTCACTGCAGCTGAAAAGGGTCCTCTCCATGTCGTGAAGGAGCTTCTCAACCATTCCACTGCTCAGACTGTTTCCAAGAAGAACCGATCGGGATTTGATCCCTTGCATATTGCAGCTAGTAAAGGCCACTACTGTATGTAG 3618 0.4422 MKCFPELATVDLFAAIALKGGIIALGLQYQPNWRTGKPGTGIGTEIWRIENFQPVPLPKSDHGKFYMGDSYIILQTTQGKGGTYFYDLHFWIGKDTSQDEAGTAAIKTVELDAALGGRAVQHREIQGHESDKFLSYFKPCIIPLAGGVVSGFTKPEEEEFETRLYVCKGKRVVRLRQIPFARSSLNHDDVFIVDTENKIFQFNGANSNIQERAKSLEVIQFLKEKYHKGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVISEDDVIPESIPAQLYSIANGEVTPVEGELSKSLLENNKCYLLDCGAEIFVWVGRVTQVEERKAACQAAEEFVASQNRPKSTRITRIIQGYETHSFKSNFDSWPSGSANTNAEEGRGKVAALLKQQGMGVKGMAKSTPVNEEIPPLLEGGGKIEVWRISGDAKTALPKEEIGKFYSGDCYIVLYTYHTGERKEDFFLCCWFGKDSIEEDQTTATRLANTMCTSLKGRPVQGRIFEGKEPPQFVAIFQPMVVLKGGLSSGYKKLLADKGASDETYTAECIALIRICGTSVHNNKSLQVDAVPASLNSAESFVLQSGSTVFIWHGNQCSFEQQQLAAKVAEFLRPGVTLKHAKEGTESSAFWSALGGKQAYTSKKVVNEVVRDPHLFTISFYKGKFKVEEVYNFSQDDLLTEDILVLDTHAEVFIWVGHSVDPKEKQNAFEIGQKYLDMAASLEGLSPHVPVYKVTEGNEPCFFTTYFSWDHAKAVVQGNSFQKKVAILFGIGHAVEDKSNGSSLGGPRQRAEALAALNNAFSSSSEKSSSMTQDRLNGLSQGGPRQRAEALAALNSAFNSSSGTKPVTPPKASGKGQGSQRAAAVAALSQVLTAEKKKVSPDGSPVASSSPLNENSPTVLAAEAKSESSEVEEVAEAKETTEELAPETASNEDMEPKQETEEESNGSQRTFTYEQLKTRSGIDVAGIDLKRREAYLSEEDFNTIFGMEKDAFYKLPRWKQDMLKKKFELVLLGIYHSLGSYDSVLLSAYMMDVAVVRTGADGQGEKDPPSPIPASAFQNPLSEISPSPSPSSSTAPALVLSNSGKRIDQTGRKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVESQVMGTLGDGDDDDLDIEIAEVRACLVNEENELGETPLFTAAEKGPLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASKGHYCM 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02458 1205 SMART ANK_2a 1154 1183 IPR002110 GO:0005515
Vian3g02458 1205 SMART ANK_2a 1096 1125 IPR002110 GO:0005515
Vian3g02458 1205 MobiDBLite consensus disorder prediction 876 896 - -
Vian3g02458 1205 FunFam Ankyrin repeat-containing protein ITN1 1070 1205 - -
Vian3g02458 1205 CDD gelsolin_S6_like 645 743 - -
Vian3g02458 1205 SUPERFAMILY Ankyrin repeat 1094 1202 IPR036770 -
Vian3g02458 1205 Gene3D Severin 270 382 IPR029006 -
Vian3g02458 1205 PRINTS Gelsolin family signature 616 635 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 346 367 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 556 576 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 697 716 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 434 450 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 460 478 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 493 513 IPR007122 GO:0051015
Vian3g02458 1205 PRINTS Gelsolin family signature 668 690 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 275 367 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 543 630 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 647 742 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 42 140 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 415 513 IPR007122 GO:0051015
Vian3g02458 1205 SMART VILL_6 160 257 IPR007122 GO:0051015
Vian3g02458 1205 FunFam Villin-4 271 377 - -
Vian3g02458 1205 Gene3D Severin 411 545 IPR029006 -
Vian3g02458 1205 Gene3D Severin 546 636 IPR029006 -
Vian3g02458 1205 Gene3D Severin 156 269 IPR029006 -
Vian3g02458 1205 FunFam Gelsolin 542 636 - -
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 157 261 - -
Vian3g02458 1205 CDD gelsolin_S3_like 277 366 - -
Vian3g02458 1205 MobiDBLite consensus disorder prediction 1049 1076 - -
Vian3g02458 1205 Gene3D - 1075 1205 IPR036770 -
Vian3g02458 1205 ProSiteProfiles Headpiece (HP) domain profile. 938 1003 IPR003128 GO:0003779|GO:0007010
Vian3g02458 1205 CDD gelsolin_S4_like 409 510 - -
Vian3g02458 1205 CDD gelsolin_S2_like 161 255 - -
Vian3g02458 1205 SUPERFAMILY VHP, Villin headpiece domain 937 1002 IPR036886 GO:0003779|GO:0007010
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 534 635 - -
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 39 171 - -
Vian3g02458 1205 FunFam Gelsolin 30 154 - -
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 619 741 - -
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 246 368 - -
Vian3g02458 1205 FunFam Villin-like 1 637 758 - -
Vian3g02458 1205 Pfam Gelsolin repeat 434 506 IPR007123 -
Vian3g02458 1205 Pfam Gelsolin repeat 289 360 IPR007123 -
Vian3g02458 1205 Pfam Gelsolin repeat 658 736 IPR007123 -
Vian3g02458 1205 Pfam Gelsolin repeat 561 606 IPR007123 -
Vian3g02458 1205 Pfam Gelsolin repeat 176 240 IPR007123 -
Vian3g02458 1205 Pfam Gelsolin repeat 52 134 IPR007123 -
Vian3g02458 1205 Gene3D Severin 638 758 IPR029006 -
Vian3g02458 1205 Pfam Villin headpiece domain 968 1002 IPR003128 GO:0003779|GO:0007010
Vian3g02458 1205 CDD gelsolin_S5_like 543 631 - -
Vian3g02458 1205 MobiDBLite consensus disorder prediction 899 937 - -
Vian3g02458 1205 Gene3D Villin headpiece domain 942 1002 IPR036886 GO:0003779|GO:0007010
Vian3g02458 1205 Gene3D Severin 31 155 IPR029006 -
Vian3g02458 1205 CDD gelsolin_S1_like 35 147 - -
Vian3g02458 1205 SMART VHP_1 968 1003 IPR003128 GO:0003779|GO:0007010
Vian3g02458 1205 MobiDBLite consensus disorder prediction 795 813 - -
Vian3g02458 1205 MobiDBLite consensus disorder prediction 1033 1076 - -
Vian3g02458 1205 PANTHER VILLIN 39 993 IPR007122 GO:0051015
Vian3g02458 1205 MobiDBLite consensus disorder prediction 795 946 - -
Vian3g02458 1205 MobiDBLite consensus disorder prediction 826 841 - -
Vian3g02458 1205 Pfam Ankyrin repeats (3 copies) 1101 1203 IPR002110 GO:0005515
Vian3g02458 1205 SUPERFAMILY Actin depolymerizing proteins 406 551 - -
Vian3g02458 1205 FunFam Villin-like 1 155 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02458 Vian-Chr3 38215533 38231035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02458 1045 1205 Miscellaneous Gene Families AT3G12360 64.815 3.29e-60 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02458 - - gmx:100788765 1667.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02458 3 38215533 38231035 Vian3g02458 3 38215533 38231035 ECH
Vian2g01934 2 38714020 38725600 Vian3g02458 3 38215533 38231035 PCT