Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02450 ATGTCAGACGCGTTCTGCAGCGACTGCAAGAAGCAGACGGAGGTTGTGTTCGACCACTCCGCCGGCGACACCGTCTGCTCCGAGTGCGGCCTCGTCCTCGAGTCCCACTCCATCGACGAGACCTCCGAGTGGCGTACCTTCGCCAACGAGTCGGGCGATAACGACCCCAACCGTGTCGGCGGTCCCTCTAACCCTCTTCTCACCGACGGCGGCCTGTCTACCGTCATCGCCAAGCCCAACGGCTCCGGCGGCGAGTTCCTCTCCTCCTCCCTCGGCCGCTGGCAGAACCGCGGTTCCAACCCCGATCGCGCCCTCATCCTGGCTTTCAAGACCATCGCCACCATGTCCGACAGGTTGGGACTGGTTGCGACCATCAAGATAGGGGCAATCATTGCACATGGAAGGTACTGTGCTTTAGGTTGTGTGGATGTTAGTGTTGAAGGAACCTCAGAAGGTTCAGTTCCTATAGCTGGTTTAGGTGCTACCCCTTTATTGAGCTCGTTGCCTTTGGAACTTTGGAAAGACTTCTTGTCAGACGAGGCATCATCTTTTGGTTCAGGGCTTTATAATCCTCCTAGGCCAGGGTCACTTCGTGTGCACCTGTATGGCTATCTGCAACTTGACTTGGGGAAAGGACTGGATTACGATTTGGCAGTCCTCATCTCATGTCATGATCGGGCTAATGAGATATATAAGAGGGTTGAAGATCAAAAGTCTAGTAGAGGAAGAAATCAGGATGCTTTATTGGCTGCTTGTCTCTACATTGCTTGCCGACAAGAAGACAAACCTCGTACTGTTAAGGAAATTTGCTCTGTTGCCAATGGGGCCACAAAGAAGGAAATTGGCCGAGCAAAAGAGTACATAGTAAAACAGCTGGGTTTGGAGAATGGTCAGTCTGTGGAGATGGGTACAATACATGCAGGGGACTTTATGAGGCGATTCTGTTCTAATCTTGGTATGAATAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTGCAGAAATCAGAAGAATTTGATATAAGAACATGGTTACGGTCAGATTGTGGATTAGAAGAAACCTGCAGGTTTTACATGATGTGTGCTGCATCTGGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATATATCATAACTCAGCTTTCTGATGATAAGAAGCCTCTTAAAGATATATCAATTGCCACAGGCGTTGCTGAAGGAACGATTAGGAACTCCTACAAGGATCTTTACCCCCATGTTTCAAAAATAATACCAAATTGGTATGCGAAGGAGGAGGATTTAAGGAGCCTTTGCAGCCCTTGA 1302 0.4923 MSDAFCSDCKKQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGSGGEFLSSSLGRWQNRGSNPDRALILAFKTIATMSDRLGLVATIKIGAIIAHGRYCALGCVDVSVEGTSEGSVPIAGLGATPLLSSLPLELWKDFLSDEASSFGSGLYNPPRPGSLRVHLYGYLQLDLGKGLDYDLAVLISCHDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRTWLRSDCGLEETCRFYMMCAASGRSPISIAAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLRSLCSP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02450 433 CDD CYCLIN_TFIIB_rpt1 225 293 - -
Vian3g02450 433 Pfam Transcription factor TFIIB repeat 223 283 IPR013150 GO:0017025
Vian3g02450 433 Pfam Transcription factor TFIIB repeat 362 411 IPR013150 GO:0017025
Vian3g02450 433 Gene3D - 216 292 - -
Vian3g02450 433 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 430 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 Gene3D - 306 431 - -
Vian3g02450 433 ProSitePatterns Transcription factor TFIIB repeat signature. 242 257 IPR023486 -
Vian3g02450 433 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Vian3g02450 433 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Vian3g02450 433 SMART cyclin_7 309 411 IPR013763 -
Vian3g02450 433 SMART cyclin_7 204 290 IPR013763 -
Vian3g02450 433 PRINTS Transcription initiation factor IIB signature 310 328 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 PRINTS Transcription initiation factor IIB signature 250 269 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 PRINTS Transcription initiation factor IIB signature 277 292 IPR000812 GO:0006352|GO:0070897
Vian3g02450 433 Gene3D - 5 135 - -
Vian3g02450 433 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Vian3g02450 433 SUPERFAMILY Cyclin-like 223 294 IPR036915 -
Vian3g02450 433 SUPERFAMILY Cyclin-like 355 427 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02450 Vian-Chr3 38068216 38072354 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02450 K03124 - fve:101305780 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02450 3 38068216 38072354 Vian3g02450 3 38068216 38072354 ECH
Vian2g01919 2 38360728 38363751 Vian3g02450 3 38068216 38072354 PCT