Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01919 ATGTCTGACGTCTTCTGCACTGACTGCAAGAGGCAGACGGAGGTCGTCTTCGACCACTCGGCGGGGGACACCGTCTGTTCCGAGTGCGGTCTCGTCTTGGAGTCTCACTCCATTGACGAAACCTCCGAGTGGCGAACCTTCGCCAACGAGTCCGGCGACAACGACCCCGTGCGTGTTGGCGGGCCCACCAACCCGCTTCTCACTGACGGCGGCCTCTCCACCGTCATAGCCAAGCCGAACGGCGCCTCTGGCGAGTTCCTCACCTCCTCACTCGGCCGCTGGCAGAACCGCGGCTCCAACCCCGACCGCGGACTCATCGTCGCCTTCAAAAGCATCGCCACCATGTCCGATAGGTTGGGACTTGTTGCAACTATCAAGATGCCATGGCGGCCATTCCTTCTGAAATCATCATCCACCACGGCATTTGCAATGGCGGCCATGGGACCACCATTGAACAAGGTTCTTGGTAGTGTCATTCATACCCATTGGAGTAATGGAGCACTTCACTTATTGTTGGAATTCGTTTGTGGCGATGCACTGGATCGGGCTAATGAGATATATAAACGAGTTGAGGACCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAGGACAAGCCTCGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCTTCCAAGAAGGACATTGGCCGAGCGAAAGAATACGTAGTGAAACAACTGGGTTTGGAGAAGGGCCAATCTGTAGAGATGGGAACAATACACGCTGGGGACTTTATGGTGAGGCGTTTTTGTTCTAATCTCGGTATGAATAATCAAGCTGTTAAAGCCGCTCAGGAAGCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGAAGCCCCATATCAATTGCTGCAGCAGTTATATACATTATAACTCAGCTTTCCGATGATAAAAAACCCCTCAAAGATATATCAGTTGCTACAGGAGTTGCAGAAGGAACCATTAGGAACTCGTACAAGGATCTTCATCCTTATGTTTTCAAAATAATACCAAATTGGTATGCAAAGGAAGAGTATTTGAAGAACTTATGCAGCCCTTAG 1104 0.4955 MSDVFCTDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPNGASGEFLTSSLGRWQNRGSNPDRGLIVAFKSIATMSDRLGLVATIKMPWRPFLLKSSSTTAFAMAAMGPPLNKVLGSVIHTHWSNGALHLLLEFVCGDALDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGASKKDIGRAKEYVVKQLGLEKGQSVEMGTIHAGDFMVRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLHPYVFKIIPNWYAKEEYLKNLCSP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01919 367 Gene3D - 5 128 - -
Vian2g01919 367 SMART cyclin_7 169 246 IPR013763 -
Vian2g01919 367 SMART cyclin_7 265 345 IPR013763 -
Vian2g01919 367 Gene3D - 176 248 - -
Vian2g01919 367 ProSitePatterns Transcription factor TFIIB repeat signature. 198 213 IPR023486 -
Vian2g01919 367 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 364 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 SUPERFAMILY Cyclin-like 179 250 IPR036915 -
Vian2g01919 367 Gene3D - 265 366 - -
Vian2g01919 367 FunFam Transcription initiation factor IIB 262 366 - -
Vian2g01919 367 SUPERFAMILY Cyclin-like 267 362 IPR036915 -
Vian2g01919 367 Pfam Transcription factor TFIIB repeat 266 343 IPR013150 GO:0017025
Vian2g01919 367 Pfam Transcription factor TFIIB repeat 181 230 IPR013150 GO:0017025
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 331 345 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 267 285 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 299 315 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 206 225 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 PRINTS Transcription initiation factor IIB signature 233 248 IPR000812 GO:0006352|GO:0070897
Vian2g01919 367 CDD CYCLIN_TFIIB_rpt1 108 249 - -
Vian2g01919 367 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Vian2g01919 367 Pfam TFIIB zinc-binding 5 47 IPR013137 -
Vian2g01919 367 SUPERFAMILY Zinc beta-ribbon 4 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01919 Vian-Chr2 38360728 38363751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01919 K03124 - csav:115709742 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01919 2 38360728 38363751 Vian2g01919 2 38360728 38363751 ECH
Vian2g01919 2 38360728 38363751 Vian3g02450 3 38068216 38072354 PCT