Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02017 ATGAAGAGGCTAGTAACTGTGCTTTTACTCATAGTATTAAGCACTGCTGTGGGAGGTCAAGATGATCATGGACCGTGTAAACAGAAAGTGTTGGATCCTCGGCCTCACAGTGTGTCAATCTTGGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCCGACAAAGGTGGTGCTCAACTATATGTTCCATCCGGCAAATGGCTTTCCGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCGCAGGATTATGCACACTGGCCTGCAGTGGATCCCCTACCCTCCTATGGTCGGGGAATTGATGTTCCAGGTGGGAGATATAGCAGTTTGATTTATGGACGCAACTTAAGTGATGTGGTGATTACAGGTGACAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGAACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATGATATCGTAATCTCAAATTTGACCCTTTTAAACTCTCCTGCCTGGAGCATTCATCCAGTGTATTGCAGCAATGTCCGAATCCAAAACATAACAGCTCATGCACCAACCGAGTTCCCTTACACAAGTGGTATAGTTCCAGATTCTTCCGAGCATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCTTATGGCAAACCAACCTCGAATGTCCACATCAGGGGTGTTTATCTGCAATCATCATCTGGTGCTGGCCTAGCATTTGGAAGCGAGATGTCTGGAGGCATCTCTGGTATAACAGCAGAGCAGCTCCATATTATAAACTCGACCATTGGCATTGAACTGAAGACAACTATGGGTCGAGGTGGCTATATGAGAAACATCTTCATTTCTGACACAAAATTGGAAAATATTTACTTGGGTATTAGCATGACAGGATTCTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGTGGTTGGTAATGTTACTCTCGAAAATGTGATTGGTGCAAATGTTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCACCCTTCACTCCTATTTTCCTTTCAAACGTGACTTTTTCTACCGGTTCTGAGTCATCTTCTTCATGGTTTTGTTCTAATGTAAAGGGAGTCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGACCTGCAGAACACGCTGTCAAACTTTTCGTCTATTTTTTCTTCTATACAACCATCGTACAGTTATGTCTCAAGCGCATGA 1362 0.4332 MKRLVTVLLLIVLSTAVGGQDDHGPCKQKVLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLYVPSGKWLSGSFNLTSHLTLFLERGATIIASQDYAHWPAVDPLPSYGRGIDVPGGRYSSLIYGRNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELVGSDDIVISNLTLLNSPAWSIHPVYCSNVRIQNITAHAPTEFPYTSGIVPDSSEHVCIDNSNISTGHDAIVLKSGWDQYGVAYGKPTSNVHIRGVYLQSSSGAGLAFGSEMSGGISGITAEQLHIINSTIGIELKTTMGRGGYMRNIFISDTKLENIYLGISMTGFSGSHPDDKYDPNAVPVVGNVTLENVIGANVAIAGNFSGIVDSPFTPIFLSNVTFSTGSESSSSWFCSNVKGVSEEVFPEPCPDLQNTLSNFSSIFSSIQPSYSYVSSA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02017 453 Gene3D - 26 421 IPR012334 -
Vian3g02017 453 PANTHER PECTIN LYASE-RELATED 20 433 - -
Vian3g02017 453 SUPERFAMILY Pectin lyase-like 27 441 IPR011050 -
Vian3g02017 453 SMART pbh1 232 253 IPR006626 -
Vian3g02017 453 SMART pbh1 266 288 IPR006626 -
Vian3g02017 453 SMART pbh1 205 231 IPR006626 -
Vian3g02017 453 SMART pbh1 294 315 IPR006626 -
Vian3g02017 453 SMART pbh1 323 344 IPR006626 -
Vian3g02017 453 Pfam Pectate lyase superfamily protein 38 95 IPR024535 -
Vian3g02017 453 Pfam Glycosyl hydrolases family 28 133 415 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02017 Vian-Chr3 25224234 25227520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02017 1 451 Glycoside Hydrolase AT3G16850 57.456 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02017 - - gmx:100801823 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02017 3 25224234 25227520 Vian3g02017 3 25224234 25227520 ECH
Vian2g02856 2 49410949 49413777 Vian3g02017 3 25224234 25227520 PCT