Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02856 ATGCAACTGTTCTTGCACTGGATTCAGAACTTTGTCGCCTCATTGAAGTTTCAGCTTACTGCTGCTCAAGCAGACATGAAGGAGCTAAGATCTTTGAAGTTCAGTGTTTACTTTCTGATGAAGCATTTGCATAGCTCTAGAGTGTCTGGTTATGTGGCAATGCTTTTCCTTGTTGCAATATGCGCTGCTGCGGAAAGCAACGGAGAAGACAATGGTGGACCATGTAAACAAAATGCGTTGAATGCTAGGCCTCACAGTGTATCGATCTTGGAGTTTGGGGCTGTCGGAGATGGAATAACACTGAACACAGTTGCGTTCCAAAACGCAATATTTTATCTCAAGTCGTTTGCTGACAAAGGGGGTGCCCAACTATATGTTCCATCTGGGACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACCATCATTGCATCTCAGGATTGTTCCCATTGGGATGTAGTGGATTCGCTCCCTTCTTATGGTAAAGGAACTGGGAGATATCGCAGTTTAATCTACGGACAGAATTTAAGTGATGTGGTAGTTACTGGTGATAATGGAACAATAGACGGGCAAGGTTCTATCTGGTGGAAGCTGTTCAGTTCTCATTCCTTAAACTACAGTCGACCAAATCTTATAGAATTTGTTGATTCGGTTGATGTCATAATTTCCAATTTGACTTTTGTGGACTCTCCAGCTTGGGGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCAGAACATTACTTCTCGTGCACCTGCCGAATCCCCTTACACGAGTGGCATAGTTCCAGATTCTTCTAAGTATGTTTGCATCGAGAACAGTAACATTAGCACTGGTCATGATGCAATCGTGTTGAAGAGTGGTTGGGATCAGTACGGAATTGCCTATGGAAAACCAACCTCGAGTGTCCATATCCGCAATGTTTACCTACAATCATCATCAGGTGCTGGCTTGGCTTTTGGGAGTGAGATGTCTGGGGGAATATCAGATGTTATTGCAGAAAAGCTTCACATACTTAACTCGTCCATAGGCTTTGAACTGAAAACAACTAGGGGCAGAGGTGGCTATATGAAAGGCATCTTCATTTCTGATGCAGAATTGGAAAATATTCACTTGGGAATAAGCATGACAGGATACTCCGGTTTCCATCCAGACGACAAGTATGACACGAGTGCACTTCCAGTTGTTGGTAGCATTACTTTCAAGAATGTGATGGGTGCAAATATTGATGTTGCTGGGAATTTTTCAGGAATATTTGAATCACCATTCTCAACAATCTGTCTTTCAAAAGTGACTTTTTCTCTCAGTTATGAGATATCCCCTTCGTGGTTCTGTTCTAATGTAATTGGTTTCTCCGAGGAGGTGATTCCTGAGCCATGCCCCGATCTCCAGAGCTCGTATTCCAAGTTCTCCTTTTCTTGCTTTGCTTCCCTATATCCACACTCTAGTAATATCTCCGGCTCTTTAGACCAAGTACTATAA 1515 0.4304 MQLFLHWIQNFVASLKFQLTAAQADMKELRSLKFSVYFLMKHLHSSRVSGYVAMLFLVAICAAAESNGEDNGGPCKQNALNARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATIIASQDCSHWDVVDSLPSYGKGTGRYRSLIYGQNLSDVVVTGDNGTIDGQGSIWWKLFSSHSLNYSRPNLIEFVDSVDVIISNLTFVDSPAWGIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSKYVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHIRNVYLQSSSGAGLAFGSEMSGGISDVIAEKLHILNSSIGFELKTTRGRGGYMKGIFISDAELENIHLGISMTGYSGFHPDDKYDTSALPVVGSITFKNVMGANIDVAGNFSGIFESPFSTICLSKVTFSLSYEISPSWFCSNVIGFSEEVIPEPCPDLQSSYSKFSFSCFASLYPHSSNISGSLDQVL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02856 504 PANTHER PECTIN LYASE-RELATED 56 480 - -
Vian2g02856 504 SMART pbh1 311 333 IPR006626 -
Vian2g02856 504 SMART pbh1 368 389 IPR006626 -
Vian2g02856 504 SMART pbh1 227 249 IPR006626 -
Vian2g02856 504 SMART pbh1 250 276 IPR006626 -
Vian2g02856 504 SMART pbh1 277 298 IPR006626 -
Vian2g02856 504 SUPERFAMILY Pectin lyase-like 77 474 IPR011050 -
Vian2g02856 504 Pfam Glycosyl hydrolases family 28 123 458 IPR000743 GO:0004650|GO:0005975
Vian2g02856 504 Gene3D - 75 460 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02856 Vian-Chr2 49410949 49413777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02856 52 487 Glycoside Hydrolase AT3G16850 60.771 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02856 - - gmx:100787190 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02856 2 49410949 49413777 Vian2g02856 2 49410949 49413777 ECH
Vian2g02856 2 49410949 49413777 Vian3g02017 3 25224234 25227520 PCT