Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02012 ATGGCTACGGCGAAAGCCATTTTTTTCTTAGGCATTGCTTTGCTATCTTGCAGTTTGATAGGTGCATCGCGTGGCCTTGAGAATCGCCGTAGTCTCTTGCTTCCAATTCTAAATAATGATACAAAAGTTTTTGACGTCACAAAATTCGGTGCTGTGGCAGATGGCAAGACAGACAATGTTGATGCATTTAGGGCTGCATGGGGAGCAGCATGCAAGAACAGCAGTAGTCGAGCAAAGGTTTTGATCCCAGAGGGAACTTATCGTACTGCTCAAACTATGTTCGCGGGACCATGTAGTAGCCCAAAGCCTATAACCGTTGAAGTTATAGGAACTGTTAAAGCCAACACAGATCCATCTGAGTATGTGAGTCCAGAATGGTTCACGTTTCAAGACATTGATGGCCTTGTGTTGACTGGGAGAGGAGTTTTTGATGGTGAAGGCCCTGTTATGTGGCCACTCAACGATTGCAGGCAGATCAAAACCGATTGTGCTCCCCTCCCCTCTTCTCTGAAATTCTACAAGGTCAACAACTCTGTGGTGACAGGCATCACTTCGTTGAACAGCATGCAGTTCCACTTTCACGTTCATGGCTGTAGCAACGTTTCACTGTCTAAACTCAACATAACAGCACCGGGAAACAGTCCCAACACAGACGGCATTCACATAAGTTCCAGCGACATGATCAAGGTCTTCAGCAGCGTCATCGGAACCGGTGATGACTGTATTTCCATTGGGCACAGCACCACTAACCTTACTGTCTATAACATCACCTGCGGCCCCGGTCACGGCATCAGTATCGGAAGCCTTGGCAAGAGGCCGGAGGAGCGAACTGTCAACGGCGTAACCGTTACCAATTGCACGTTCGTGAACACCACCAATGGTGCCAGAATCAAAACCTGGATCGGGACAGTGGCAGCGGAAGTTAAGAACGTTACCTATGAAGACATCATCATGAAGAATGTTCAGAATCCCGTTGTCATCGATCAGAGCTATGGCTCCAGATTGTCCAGAGCGCCATCAACTTCGGTATGGAAGATCAGCGATATTCATTTCCGGAAGATAAAAGGAACTACAGTGTCAAACATAGCAGTGTCTCTCCAATGCAGCACTCTGAACCCGTGCGAGGGTGTGGAGGTTGCCGATATAGATTTGGGTTATGCTGGTCGATTGAATACAACTTTCATATCCTCTTGTTCAAATGCAAAACCTATTTTTGGAGGGATATTGAATCCACCACCATGTTAG 1245 0.4699 MATAKAIFFLGIALLSCSLIGASRGLENRRSLLLPILNNDTKVFDVTKFGAVADGKTDNVDAFRAAWGAACKNSSSRAKVLIPEGTYRTAQTMFAGPCSSPKPITVEVIGTVKANTDPSEYVSPEWFTFQDIDGLVLTGRGVFDGEGPVMWPLNDCRQIKTDCAPLPSSLKFYKVNNSVVTGITSLNSMQFHFHVHGCSNVSLSKLNITAPGNSPNTDGIHISSSDMIKVFSSVIGTGDDCISIGHSTTNLTVYNITCGPGHGISIGSLGKRPEERTVNGVTVTNCTFVNTTNGARIKTWIGTVAAEVKNVTYEDIIMKNVQNPVVIDQSYGSRLSRAPSTSVWKISDIHFRKIKGTTVSNIAVSLQCSTLNPCEGVEVADIDLGYAGRLNTTFISSCSNAKPIFGGILNPPPC 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02012 414 SMART pbh1 308 329 IPR006626 -
Vian3g02012 414 SMART pbh1 248 268 IPR006626 -
Vian3g02012 414 SMART pbh1 198 224 IPR006626 -
Vian3g02012 414 SMART pbh1 278 299 IPR006626 -
Vian3g02012 414 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vian3g02012 414 Gene3D - 37 406 IPR012334 -
Vian3g02012 414 PANTHER - 42 401 - -
Vian3g02012 414 ProSitePatterns Polygalacturonase active site. 255 268 IPR000743 GO:0004650|GO:0005975
Vian3g02012 414 FunFam Pectin lyase-like superfamily protein 35 412 - -
Vian3g02012 414 Pfam Glycosyl hydrolases family 28 76 401 IPR000743 GO:0004650|GO:0005975
Vian3g02012 414 SUPERFAMILY Pectin lyase-like 40 414 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02012 Vian-Chr3 25136743 25143509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02012 12 414 Glycoside Hydrolase AT1G02790 43.309 4.21e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02012 K01213 - gmx:100802357 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02012 3 25136743 25143509 Vian3g02012 3 25136743 25143509 ECH
Vian3g02012 3 25136743 25143509 Vian2g01949 2 38945581 38951280 PCT