Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01949 ATGGAGTTTCAGGGAGGTCTAGCATTTCATCATGACATGAATATAGTGACAAAAGCTAAGGAAACCTTTAGCCACAATAACTTGCAAGAGGACCCACTCACCAGTATATATGTTCATCATTCACCTTCCGTTGATGATGGTGGGACATTATTCAAGAACTTCAACAAGCAAAGCGCAAATGTTTTGAGCTTAAACAGGTTTGAGAAGCGTGGCTCCCTTAAAAAGGTTAATGTCAATGATTATGGAGCTAAGAGGAATGGTGATACTGATGACTCAGAGGCTTTCAAAAAGGCTTGGGATGAGGTATGTGATTCTGGGGAAGCAATTCTTGTGGTGCCTAAGGACAATTATCTTCTCAAACCAATAAGATTCTCTGGCCCTTGCAAACCTAACATTGAAGTCCAGATTTCTGGAACACTTGAAGCAGCAGATGATCCATCAGATTACGACGAAGACAGCAGACATTGGCTTGTGTTTGACAAAATTAAGAACCTGTATGTTTATGGTGGTGGAACCCTCGATGGAAATGGCAAACCTTGCAAGGATGCTCCAACAGCTCTGACTTTCGATAGTTGTGAGGACTTGACAGTTGAGAACTTGAACATAGAAAATGCTCAACAAATCCACGTTTCATTCCAAGACTCCGAGAATGTTAAGGTTTCTGGCCTTAACGTGAATGCACCAGAGGACAGCCCCAACACCGATGGGATTCATGTCACGAAAACAAAAAACATCCAAATCTCAGATTCTGTCATTGGAACTGGTGATGATTGTATATCTATTGTACATGGATCTAAAAATGTAGAAGCTACAAACATTACATGTGGACCGGGGCATGGTATCAGTATCGGAAGCTTAGGTGCAGGAAAATCCAAGGACGTTGTTTCAGGAATAAAAGTGAACGGAGCCAAGATTTTTGGAACCAAAAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCAGGAAGTGCTAGTGACATCAAGTTTCAGAACATTGAGATGAACAATGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAAAGGCCATGCCAAAAAGCGGGCTCGGAGAAATCCGCTGTAGAAATCAAGAATGTGGTGTACGAGAACATCAGTGGTACAAGTGCTTCTGAAGTAGCTGTGAAGTTTGACTGCAGTGAGAAATTTCCGTGCCAGAAGATAAAATTGCAGAACATAGACCTTGCATGTGAAGGAGGAGATGATGCTGAGGCTCTGTGTAACAATGTTGATAAGTTATCTTATATAGGACACGTTAAGCCTCGTTGCAGTAAAGAATGA 1311 0.4142 MEFQGGLAFHHDMNIVTKAKETFSHNNLQEDPLTSIYVHHSPSVDDGGTLFKNFNKQSANVLSLNRFEKRGSLKKVNVNDYGAKRNGDTDDSEAFKKAWDEVCDSGEAILVVPKDNYLLKPIRFSGPCKPNIEVQISGTLEAADDPSDYDEDSRHWLVFDKIKNLYVYGGGTLDGNGKPCKDAPTALTFDSCEDLTVENLNIENAQQIHVSFQDSENVKVSGLNVNAPEDSPNTDGIHVTKTKNIQISDSVIGTGDDCISIVHGSKNVEATNITCGPGHGISIGSLGAGKSKDVVSGIKVNGAKIFGTKNGVRIKTWQGGSGSASDIKFQNIEMNNVTNPIIINQNYCDKKKRPCQKAGSEKSAVEIKNVVYENISGTSASEVAVKFDCSEKFPCQKIKLQNIDLACEGGDDAEALCNNVDKLSYIGHVKPRCSKE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01949 436 FunFam Polygalacturonase QRT2 61 434 - -
Vian2g01949 436 SUPERFAMILY Pectin lyase-like 74 433 IPR011050 -
Vian2g01949 436 SMART pbh1 324 345 IPR006626 -
Vian2g01949 436 SMART pbh1 192 212 IPR006626 -
Vian2g01949 436 SMART pbh1 242 263 IPR006626 -
Vian2g01949 436 SMART pbh1 215 241 IPR006626 -
Vian2g01949 436 SMART pbh1 295 316 IPR006626 -
Vian2g01949 436 Pfam Glycosyl hydrolases family 28 109 422 IPR000743 GO:0004650|GO:0005975
Vian2g01949 436 PANTHER - 75 420 - -
Vian2g01949 436 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Vian2g01949 436 Gene3D - 58 433 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01949 Vian-Chr2 38945581 38951280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01949 55 434 Glycoside Hydrolase AT3G07970 51.637 2.32e-132 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01949 K01184 - gmx:100797601 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01949 2 38945581 38951280 Vian2g01949 2 38945581 38951280 ECH
Vian3g02012 3 25136743 25143509 Vian2g01949 2 38945581 38951280 PCT