Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02011 ATGACTTTCTCCCTTTCCCTCACCATTCTGCTACCCCTTCTCTCTGTTTTTCTGCTACATGCAAATGCCTCCCCACTCCATTACAATCACCCCATTCACCATCGCCACCCTCGTTTTGCCACTCATGACTACAGAGATGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGGGACTCTGGTCTTTCTGATGGCGCCGCCCTGCGTGTTGATTTGGTCGGTGGGTACTATGATGCTGGGGACAATGTCAAATTTGGCTTCCCCATGGCCTTCACCATCACCATGCTCTCATGGAGCGTTATTGAGTTTGGTGGGCTTATGAAAGGCGAGTTGCAGAATGCCAGAGTGGCCATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGCACATCCCAACACCATTTATGTTCAGGTATTCCAGTTTGCTGATAAATACAGAGGATCCTACAGCAATGCCTTGAAACCCTTTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATTAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCCGGAGCAAGAATACTTCTCTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTTTGTTCTCTAATTCCTGGGACCTCTTTCTCTTCCACCCAGTATACACCAGGTGGGCTACTTTTTAAGATGAGTGATAGCAACATGCAGTACGTCACATCCACCTCCTTCCTGCTGTTAACATATGCGAAATACTTGACCTCAGCTCATACGGTTGTTAACTGTGGCGGAATGGCAGTAACACCAAAGAGGCTCCGGTCAATAGCTAAGAAACAGGTAGATTACTTGCTTGGAGACAACCCCTTAAAGATGTCGTACATGGTGGGGTATGGTGGAAGATACCCAAGAAGGATACACCACAGGGGTTCATCTCTACCGTCCATGGGTGTACACCCTGGAAAGATCCAATGTCGTGCAGGCTTTAGTGTGATGAATTCACAATCCCCGAACCCAAACATTCTAGTGGGGGCTATTGTGGGTGGACCGGACCAACATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCCACATACATAAACTCACCCCTTGTAGGAGCACTGGCGTATCTAGCTCACTCATTTGGTCAAATCTAG 1323 0.483 MTFSLSLTILLPLLSVFLLHANASPLHYNHPIHHRHPRFATHDYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGAALRVDLVGGYYDAGDNVKFGFPMAFTITMLSWSVIEFGGLMKGELQNARVAIRWATDYLLKATAHPNTIYVQVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHTVVNCGGMAVTPKRLRSIAKKQVDYLLGDNPLKMSYMVGYGGRYPRRIHHRGSSLPSMGVHPGKIQCRAGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDERSDYEQSEPATYINSPLVGALAYLAHSFGQI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02011 440 Pfam Glycosyl hydrolase family 9 153 430 IPR001701 GO:0004553|GO:0005975
Vian3g02011 440 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 406 424 IPR033126 -
Vian3g02011 440 Gene3D - 39 153 IPR012341 GO:0005975
Vian3g02011 440 PANTHER ENDO-1,4-BETA-GLUCANASE 153 435 - -
Vian3g02011 440 Gene3D - 154 440 IPR012341 GO:0005975
Vian3g02011 440 SUPERFAMILY Six-hairpin glycosidases 41 438 IPR008928 GO:0005975
Vian3g02011 440 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 333 359 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02011 Vian-Chr3 25117015 25119226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02011 152 440 Glycoside Hydrolase AT4G02290 82.699 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02011 K01179 - gmx:100789144 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02011 3 25117015 25119226 Vian3g02011 3 25117015 25119226 ECH
Vian2g02862 2 49475668 49477819 Vian3g02011 3 25117015 25119226 PCT