Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02862 ATGACTTTTTCTCTCTTTTCTTGTCTCCTTTTCCTTCTTTCTGTCTTTTCCACCCTTTCTCACTCCCTCACTCCCCATTCCCACCACCACCCTCACTCTGCCACACACAACTACAGAGATGCTCTCACAAAATCCATCCTTTTTTTCGAGGGTCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTATCTGATGGCTCCGCCATGAATGTTGATTTGGTTGGAGGGTACTACGATGCTGGGGATAATGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAATTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCTACTGCACATCCAGACACCATTTATGTCCAGGTTTTCCAGTTTGCTGACAAATACAGGGGATCCTACAGCAATGGCTTGAAGTCCGTTGTGTGCCCCTTTTATTGCTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGAGCTACTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAAGCGAATGGACAGACCCTTGGGGCTGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTGCTTTCCAAGGAATTTCTTGTTCGAAAGGTGCAATCCCTGCATGACTACAAGGGGCATGCAGACAATTTTATCTGTTCTGTTATCCCCGGTTCCTCCTCTTCTCGATTCACCCCAGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAGTATGTGACTTCCACCTCCTTTATACTCTTAGCTTATGCTAAGTATTTAACCAAAGCCCATGTGGTTGTGAACTGCGGTGGAACCACAGTGACTCCAAAGAGACTACGTGCCATAGCCAAAAAACAGGTGGATTACCTGTTAGGAGAGAACCCCTTGAAGATGTCATACATGGTGGGGTATGGGCCACGGTTTCCGCGAAGGATACACCACAGGGGCTCATCGCTGCCGTCCGTTGGTGTTCACCCTGGCAAGATCCAATGCTCGGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACACTCTAGTGGGTGCCGTTGTTGGAGGACCAGATCTGAATGATCGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAACCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTCGCACACTCTTCTGGCCAACTCTAG 1299 0.4788 MTFSLFSCLLFLLSVFSTLSHSLTPHSHHHPHSATHNYRDALTKSILFFEGQRSGKLPSNQRMSWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVFQFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGATWLHKATKNPMYLNYIKANGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSSRFTPGGLLFKMGDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGPRFPRRIHHRGSSLPSVGVHPGKIQCSAGFSVMNSESPNPNTLVGAVVGGPDLNDRFPDERSDYEQSEPATYINAPLVGSLAYLAHSSGQL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02862 432 SUPERFAMILY Six-hairpin glycosidases 26 427 IPR008928 GO:0005975
Vian2g02862 432 Pfam Glycosyl hydrolase family 9 147 421 IPR001701 GO:0004553|GO:0005975
Vian2g02862 432 Gene3D - 148 432 IPR012341 GO:0005975
Vian2g02862 432 PANTHER ENDO-1,4-BETA-GLUCANASE 147 428 - -
Vian2g02862 432 Gene3D - 33 147 IPR012341 GO:0005975
Vian2g02862 432 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 325 351 IPR018221 -
Vian2g02862 432 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 398 416 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02862 Vian-Chr2 49475668 49477819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02862 146 432 Glycoside Hydrolase AT4G02290 78.201 1.27e-172 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02862 K01179 - gmx:100793900 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02862 2 49475668 49477819 Vian2g02862 2 49475668 49477819 ECH
Vian2g02862 2 49475668 49477819 Vian3g02011 3 25117015 25119226 PCT