Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01952 ATGGGGGTTGTCACTGTTGGAGAATTAAAGCCTAGCATCTCTGGGAAGAGGACCTTTCGTCCTAGTTCGAGCATAAGGCATGCCACTGAATGGATTGTGAAAGTTCAGTTTCTGCATAGTAGCACCACCTGGGAAGCTTTCATTTTGTCTTGTCGTATTGCTCGTGTTCCCACTCATTCTGTATTTATTGAGTTGGGGACCATTCACACCTACGTACTTGATCTTGGAAGATTACATTGTCTTCGGCAGTTGTTGCTTTACATTGAAATTTCCATGTCTACGCCATGCAATAATTCAGCCAGGTTTGTAAATTACAGGCCGATATCTGATGTCTCTAGTGATCTCACCATTGAAGTAGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTTGTTTCTAGGAGTGGAAGGATTCGGAAAATGCTATTAGAAGCAAAAGATTCAAAAGTTTCACGGATAAGTCTCCCAAACGTGCCGGGTGGTGCAGAGGCATTTGAGCTGGCTGCCAAATTCTGTTATGGAATTAATGTTGAGCTCACCCTCTCCAATGTTGCCATGCTAAAATGTGTTGCTCATTTTCTAGAAATGACAGAAGAGTTCTCAGAGAAAAACCTGGAGACACGAGCCGAAGCATACCTAAAGGAAACGGTGCTACCAAATATATCAAACACAATATCTGTTCTTCACCGTTGTGAAACTCTTGTCCCCACTTCAGAAGAGATTAGTCTTGTCAGCAGACTAATCAATGCAATTGCAAATAATGCATGTAAAGAACAGCTCACCACTGGTTTACAAAAGCTGGACCATAACTTCCCTTCTAAAATCATCACAAACATGGAACCCGAAACACCCTCAGAATGGTGGGGGAAATCTCTCAATATTCTTAGTCTTGATTTCTTCCAAAGAGTTTTGTCTGCAGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGGGATTGTTAGGGACCACCATGCAGTGAAAGGATGTTTTCCCGACTTAGAATTGCAGAAGAAACAAAGAGTCATTGTTGAAGCCATTTCTGGCTTACTACCAACACAATCAAGGAAAAGCCCGGTTCCAATGGCATTTCTCTCAAGCTTGTTGAAAGCTGCAATAGCTGCATCGGCATCCACTTCTTGCAGATCTGACTTGGAGAGAAGAATTGGTCTACAACTTGACCAGGCAATTCTCGAAGACATCCTAATCCCAACAAATTCACATCAAAATACCCATGGCACCATTTATGACACTGATTCAATTTTGAGAATTTTTTCCAATTTTCTCAACTTGGACGAGGAGGACCAAGAGGATAATAATCACTTGAGAGATGAAAGTGAAATGGTTTATGACTATGACAGCCCCGGATCTCCAAAACAAAGCTCAATTCTGAAGGTATCAAAATTGATGGACAACTATCTCGCCGAAGTCGCACTAGACCCAAACTTGTTGCCATCAAAGTTCATCTCCCTTGCTGAACTACTTCCAGATCACGCACGTATTGTGAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGATTCAGAGAGATACCGGCTGTGCAAAACCATTGATTGTCAGAAACTGTCTCAAGAAGCGTGCAGCCATGCAGCACAAAATGAAAGGCTACCAGTGCAGATGGCAGTGCAGGTTCTATACTTTGAGCAAATAAGGCTTCGGAATGCCATGAACGGAGGGCACAGCCAATTTTTATTTGGAGGAATGAATGGTCAATACCCTCATCGTTCAGGAAGTGGTGCAGGAAGCGGAGCCATTTCCCCGAGAGACAACTATGCATCAGTGAGAAGGGAGAACCGAGAGCTGAAGCTAGAAGTTGCAAGAATGAGAATGAGGCTGACAGACTTGGAGAAAGACCACGTTAACATGAAGCAGGAGCTAGTGAGATCTCACCCTGCCAATAAGCTATTCAAATCACTCACCAAAAAACTAAGCAAGCTCAATGCTCTATTTCGGATCAACAGTACCAAGCCAAATGCCTCTGAGAGTCGCTTCCCTTTCCCCAAGAGAAGGCGTCACTCAGTTTCATGA 2109 0.4277 MGVVTVGELKPSISGKRTFRPSSSIRHATEWIVKVQFLHSSTTWEAFILSCRIARVPTHSVFIELGTIHTYVLDLGRLHCLRQLLLYIEISMSTPCNNSARFVNYRPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKMLLEAKDSKVSRISLPNVPGGAEAFELAAKFCYGINVELTLSNVAMLKCVAHFLEMTEEFSEKNLETRAEAYLKETVLPNISNTISVLHRCETLVPTSEEISLVSRLINAIANNACKEQLTTGLQKLDHNFPSKIITNMEPETPSEWWGKSLNILSLDFFQRVLSAVKSKGLKQDMISKILINYAHNSLQGIVRDHHAVKGCFPDLELQKKQRVIVEAISGLLPTQSRKSPVPMAFLSSLLKAAIAASASTSCRSDLERRIGLQLDQAILEDILIPTNSHQNTHGTIYDTDSILRIFSNFLNLDEEDQEDNNHLRDESEMVYDYDSPGSPKQSSILKVSKLMDNYLAEVALDPNLLPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHSQFLFGGMNGQYPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVNMKQELVRSHPANKLFKSLTKKLSKLNALFRINSTKPNASESRFPFPKRRRHSVS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01952 702 Pfam BTB/POZ domain 112 215 IPR000210 GO:0005515
Vian3g01952 702 PANTHER OS12G0117600 PROTEIN 109 663 IPR043454 -
Vian3g01952 702 Coils Coil 698 702 - -
Vian3g01952 702 Pfam NPH3 family 286 554 IPR027356 -
Vian3g01952 702 ProSiteProfiles BTB domain profile. 113 181 IPR000210 GO:0005515
Vian3g01952 702 SUPERFAMILY POZ domain 91 198 IPR011333 -
Vian3g01952 702 Coils Coil 618 652 - -
Vian3g01952 702 ProSiteProfiles NPH3 domain profile. 286 578 IPR027356 -
Vian3g01952 702 Gene3D Potassium Channel Kv1.1; Chain A 97 219 IPR011333 -
Vian3g01952 702 SMART BTB_4 113 205 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01952 Vian-Chr3 23351192 23355188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01952 97 528 EF-hand Containing Proteins AT2G47860 58.874 1.15e-175 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01952 - - gmx:100814622 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01952 3 23351192 23355188 Vian3g01952 3 23351192 23355188 ECH
Vian2g02913 2 49860899 49864278 Vian3g01952 3 23351192 23355188 PCT